Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o07
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0631 - 18190195-18190686,18190866-18191066 90 2e-18
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 83 2e-16
04_01_0630 - 8354628-8355803,8355837-8355926 73 2e-13
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 49 4e-06
03_02_0868 + 11937652-11937757,11938097-11938671 48 1e-05
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 47 1e-05
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 47 2e-05
12_01_0723 - 6360652-6360753,6360898-6361239 46 3e-05
09_02_0336 - 7397745-7398308,7398813-7400723 35 0.057
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 33 0.23
06_03_0167 - 17412527-17413144,17413269-17414168 31 0.70
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346... 30 1.6
01_07_0157 - 41547505-41547861,41547949-41548078,41548180-415484... 29 3.8
01_02_0009 - 10135444-10135536,10135860-10135909,10136292-101369... 28 6.6
12_01_0040 + 323731-323801,323893-324097,324415-324558,325070-32... 28 8.7
11_01_0041 + 307816-307892,307983-308187,308499-308642,309132-30... 28 8.7
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 89.8 bits (213), Expect = 2e-18
Identities = 41/107 (38%), Positives = 65/107 (60%)
Frame = +1
Query: 400 ITWEARKQRTVALSSTEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLA 579
++W +KQ ++ALS+ EAEY+A + ++++ + G + L DN+ A+K+A
Sbjct: 103 VSWSFKKQNSIALSTAEAEYVAAGSCCAQLLWMKQTLKVFGYNFTKIPLLCDNESAIKIA 162
Query: 580 QSRSYHSRTKHIDVRHHFVRDMCEQSVIDLKYLSTDKMPADILTKGL 720
+ HSRTKHID+RHHF+RD + I L ++ T+ ADI TK L
Sbjct: 163 NNPVQHSRTKHIDIRHHFLRDHETKGDICLTHVRTESQLADIFTKPL 209
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/102 (37%), Positives = 65/102 (63%)
Frame = +1
Query: 55 ENNVCLLKKSLYGLRQSGLQWHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVD 234
E+ VC LK+SLYGL+QS QW+K+ + + GF+ + CV++ + + + +YVD
Sbjct: 158 EDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKWSEFDSCVYIKFVNGSPIYLLLYVD 217
Query: 235 DIILATNDEVWLHDVKRQLSNAFEMKDMGKISTCLGIEFSRD 360
D+++A + + +K+QLS+ F+MKD+G LG+E +RD
Sbjct: 218 DMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRD 259
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 601 RTKHIDVRHHFVRDMCEQ 654
RTK+ID+++H+VRD+ Q
Sbjct: 416 RTKYIDIKYHYVRDVVAQ 433
>04_01_0630 - 8354628-8355803,8355837-8355926
Length = 421
Score = 73.3 bits (172), Expect = 2e-13
Identities = 34/91 (37%), Positives = 54/91 (59%)
Frame = +1
Query: 76 KKSLYGLRQSGLQWHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVDDIILATN 255
KKSLYGL+QSG W+ +L L G+ PCVF+ + +I++YVDD+ + N
Sbjct: 30 KKSLYGLKQSGRMWYNRLSEFLSLKGYTKNDDCPCVFIKKSPTGFCIISVYVDDLNIIGN 89
Query: 256 DEVWLHDVKRQLSNAFEMKDMGKISTCLGIE 348
+ +++ + L FEMKD+G+ CLG++
Sbjct: 90 TQD-INEARHHLKTEFEMKDLGQTKFCLGLQ 119
>01_05_0320 - 20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 48.8 bits (111), Expect = 4e-06
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Frame = +1
Query: 391 GAPITWEARKQRTVALSSTEAEYLALSEATKEAMYLRNVVNNIGV--KCGCVTLFN-DNQ 561
G ++W++ KQ + S+ EAE AL AT EA +LR ++ ++ V K L N DNQ
Sbjct: 854 GGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQ 913
Query: 562 GA-MKLAQSRSYHSRTKHIDVRHHFVRDMCEQSVIDLKYLSTDKMPADILTKGL 720
+K+ S+ ++HI R V VI L Y+ T + AD TKGL
Sbjct: 914 TVIIKVNSSKDNMKSSRHIKRRLKSV----HSGVIALDYVQTARNLADQFTKGL 963
Score = 48.0 bits (109), Expect = 8e-06
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = +1
Query: 151 GFEALPQEPCVFVAQRDEKMMLIAIYVDDIILATNDEVWLHDVKRQLSNAFEMKDMGKIS 330
GF + CV+ + +++ +YVDDI++ + +VK LS FEMKD+G+
Sbjct: 717 GFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKNFEMKDLGEAD 776
Query: 331 TCLGIEFSRDKEHRVYLKQA 390
L I+ R E + L Q+
Sbjct: 777 VILNIKLQRGDEGGITLVQS 796
>03_02_0868 + 11937652-11937757,11938097-11938671
Length = 226
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/90 (28%), Positives = 46/90 (51%)
Frame = +1
Query: 88 YGLRQSGLQWHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVDDIILATNDEVW 267
YG + G +W K +L+ GF + CV+ + +++ +YVDDI++ +
Sbjct: 17 YGCKPVGCKWVFKK--KLRPDGFAVNEADKCVYYLHGGVEGVILCLYVDDILIFGTNLEM 74
Query: 268 LHDVKRQLSNAFEMKDMGKISTCLGIEFSR 357
+++VK L F+MKD+G L I+ R
Sbjct: 75 INEVKSFLYQNFDMKDLGVADVILNIKLIR 104
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +1
Query: 115 WHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVDDIIL-ATNDEVWLHDVKRQL 291
W +L+ GF + CV+ + +++ +YVDDI++ TN EV +++VK L
Sbjct: 676 WEWVFKKKLRPDGFAVNKADKCVYYRHGRGEGVILCLYVDDILIFGTNLEV-INEVKSFL 734
Query: 292 SNAFEMKDMGKISTCLGIEFSRDKEHRVYLKQA 390
S F+MKD+G L I+ R E+ + L Q+
Sbjct: 735 SQNFDMKDLGVADVILNIKLIRG-ENGITLLQS 766
Score = 35.9 bits (79), Expect = 0.033
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 391 GAPITWEARKQRTVALSSTEAEYLALSEATKEAMYLRNVVNNIGV 525
G ++W + KQ + S+ EAE AL AT EA +LR+++ ++ V
Sbjct: 898 GGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPV 942
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +1
Query: 130 VGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVDDIIL-ATNDEVWLHDVKRQLSNAFE 306
+ L I F + CV+ + +++ +YVDD+++ TN EV +++VK LS F+
Sbjct: 440 IAGLTTIRFAVNEADKCVYYRHGGGEGVILCLYVDDVLIFGTNLEV-INEVKSFLSQNFD 498
Query: 307 MKDMGKISTCLGIEFSRDKEHRVYLKQA 390
MKD+G + L I+ R E+ + L Q+
Sbjct: 499 MKDLGVVDVILNIKLIRG-ENGITLLQS 525
>12_01_0723 - 6360652-6360753,6360898-6361239
Length = 147
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = +1
Query: 448 EAEYLALSEATKEAMYLRNVVNNIGV--KCGCVTLFN-DNQGAM-KLAQSRSYHSRTKHI 615
EAE AL AT EA +LR ++ ++ V K L N DNQ + K+ S+ ++H+
Sbjct: 2 EAELTALDTATVEAKWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRHV 61
Query: 616 DVRHHFVRDMCEQSVIDLKYLSTDKMPADILTKGL 720
R +VR VI L Y+ T + AD TKGL
Sbjct: 62 KRRLKYVRKQKNSGVIALDYVQTARNLADQFTKGL 96
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 274 DVKRQLSNAFEMKDMGKISTCLGIEFSRDK 363
+ K+ LS+ F+MKD+G+ S LGIE RD+
Sbjct: 638 ETKKFLSSNFDMKDLGEASYVLGIEIHRDR 667
>04_04_0468 -
25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -3
Query: 666 INHTLFTHISNKMVSNINMLSARMIASTLCKLHSTLVVIK*CHTTTFYTNIIYHISEIHS 487
+NH+ T I K + ++ + S RM+ ++LC + +K + NII+ + E+ S
Sbjct: 201 VNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLK--SLWRLHENIIFCLQELGS 258
Query: 486 FLSCFRKRQVLGF 448
F + R L F
Sbjct: 259 FGALQAARTFLSF 271
>06_03_0167 - 17412527-17413144,17413269-17414168
Length = 505
Score = 31.5 bits (68), Expect = 0.70
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Frame = +1
Query: 70 LLKKSLYGLRQSGLQ-----WHKKLVGRLKNIGFEALPQEPCVFVAQRDEKMMLIAIYVD 234
L+ L+G R S L+ W L+G L ++ F ALP +A+R +ML+A
Sbjct: 19 LITLFLHGSRDSDLRLPPGPWRLPLIGSLHHLFFGALPHRALRDLARRHGPLMLLAFGDA 78
Query: 235 DIILATNDEVWLHDVKRQLSNAFEMKDMGK-ISTC----LGIEFSRDKEH 369
+++ + ++ R + F + + + C GI F+ EH
Sbjct: 79 PVVVVASTAGAAREILRTHDDNFSSRPLSAVVKVCTRRGAGITFAPYGEH 128
>04_04_0027 + 22232781-22233051,22234256-22234329,22234471-22234638,
22234812-22234971,22235062-22235145,22235781-22236078,
22236158-22236364,22236465-22236735,22236971-22237055,
22237141-22237182,22237302-22237350,22237825-22237894,
22238314-22238463,22238592-22238619,22238856-22238990,
22240693-22241469,22242133-22242192,22242367-22242413
Length = 991
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +1
Query: 505 VVNNIGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDVRHHFVRDMCEQSVIDLKYLST 684
VV +GV C ++ ND G + L +RS K + +D I+ +
Sbjct: 813 VVRRVGVACTAASMLNDTPGLLALLDARSQEQPLKILLKSVEDAKDFISNWKINKDVVEV 872
Query: 685 DKMPA 699
D PA
Sbjct: 873 DVCPA 877
>01_07_0157 -
41547505-41547861,41547949-41548078,41548180-41548469,
41548561-41548742,41548838-41549057,41550806-41550824,
41551104-41551364,41551466-41551584
Length = 525
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 260 SSLVARIMSST*IAINIIFSSLCATNTQGSCGNASKPIFFNLPT 129
S +VA IM+ T + + F ++ + T G C + + PIFF + T
Sbjct: 397 SVVVAFIMALTSLGSQVAFQAMVSIATIGLCISYALPIFFRVTT 440
>01_02_0009 -
10135444-10135536,10135860-10135909,10136292-10136901,
10137891-10138151
Length = 337
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 558 VVIK*CHTTTFYTNIIYHISEIHSFLS 478
++I C T F+ + YH+SE H F +
Sbjct: 84 LIIHYCDLTRFFLSAFYHLSETHFFFN 110
>12_01_0040 +
323731-323801,323893-324097,324415-324558,325070-325211,
326918-327033
Length = 225
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 187 VAQRDEKMMLI-AIYVDDIILATNDEVWLHDVKRQLSNAF 303
+A R E ++L A Y DD+ L ++E WL K L N F
Sbjct: 95 LAMRYEALLLRQAEYSDDLHLQVSNEEWLTFAKDSLDNGF 134
>11_01_0041 +
307816-307892,307983-308187,308499-308642,309132-309273,
309552-309616
Length = 210
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 187 VAQRDEKMMLI-AIYVDDIILATNDEVWLHDVKRQLSNAF 303
+A R E ++L A Y DD+ L ++E WL K L N F
Sbjct: 97 LAMRYEALLLRQAKYSDDLHLQVSNEEWLTFAKDSLDNGF 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,499
Number of Sequences: 37544
Number of extensions: 360342
Number of successful extensions: 991
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -