Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o07
(725 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84694-1|CAA59169.1| 452|Homo sapiens mitochondrial elongation ... 30 7.3
X69141-1|CAA48896.1| 417|Homo sapiens farnesyl-diphosphate far... 30 7.3
S76822-1|AAB33404.1| 417|Homo sapiens squalene synthase protein. 30 7.3
S75463-1|AAC60647.1| 452|Homo sapiens P43 protein. 30 7.3
L38995-1|AAB00499.1| 452|Homo sapiens elongation factor Tu prot... 30 7.3
L06105-1|AAA36645.1| 417|Homo sapiens squalene synthetase protein. 30 7.3
L06070-1|AAA60582.1| 417|Homo sapiens squalene synthetase protein. 30 7.3
CR457033-1|CAG33314.1| 417|Homo sapiens FDFT1 protein. 30 7.3
BT006704-1|AAP35350.1| 417|Homo sapiens farnesyl-diphosphate fa... 30 7.3
BC029641-1|AAH29641.1| 417|Homo sapiens farnesyl-diphosphate fa... 30 7.3
BC010041-1|AAH10041.2| 455|Homo sapiens Tu translation elongati... 30 7.3
BC009251-1|AAH09251.1| 417|Homo sapiens farnesyl-diphosphate fa... 30 7.3
BC003573-1|AAH03573.1| 417|Homo sapiens farnesyl-diphosphate fa... 30 7.3
BC001633-1|AAH01633.2| 455|Homo sapiens Tu translation elongati... 30 7.3
AK126937-1|BAC86755.1| 1127|Homo sapiens protein ( Homo sapiens ... 30 7.3
AB023164-1|BAA76791.3| 2330|Homo sapiens KIAA0947 protein protein. 30 7.3
>X84694-1|CAA59169.1| 452|Homo sapiens mitochondrial elongation
factor Tu protein.
Length = 452
Score = 30.3 bits (65), Expect = 7.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 442 STEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDV 621
ST A + A ++ A Y++N++ GC+ + N G M Q+R + + I V
Sbjct: 116 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM--PQTREHLLLARQIGV 173
Query: 622 RH 627
H
Sbjct: 174 EH 175
>X69141-1|CAA48896.1| 417|Homo sapiens farnesyl-diphosphate
farnesyltransferase protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>S76822-1|AAB33404.1| 417|Homo sapiens squalene synthase protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>S75463-1|AAC60647.1| 452|Homo sapiens P43 protein.
Length = 452
Score = 30.3 bits (65), Expect = 7.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 442 STEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDV 621
ST A + A ++ A Y++N++ GC+ + N G M Q+R + + I V
Sbjct: 119 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM--PQTREHLLLARQIGV 176
Query: 622 RH 627
H
Sbjct: 177 EH 178
>L38995-1|AAB00499.1| 452|Homo sapiens elongation factor Tu
protein.
Length = 452
Score = 30.3 bits (65), Expect = 7.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 442 STEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDV 621
ST A + A ++ A Y++N++ GC+ + N G M Q+R + + I V
Sbjct: 116 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM--PQTREHLLLARQIGV 173
Query: 622 RH 627
H
Sbjct: 174 EH 175
>L06105-1|AAA36645.1| 417|Homo sapiens squalene synthetase protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>L06070-1|AAA60582.1| 417|Homo sapiens squalene synthetase protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>CR457033-1|CAG33314.1| 417|Homo sapiens FDFT1 protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>BT006704-1|AAP35350.1| 417|Homo sapiens farnesyl-diphosphate
farnesyltransferase 1 protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>BC029641-1|AAH29641.1| 417|Homo sapiens farnesyl-diphosphate
farnesyltransferase 1 protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>BC010041-1|AAH10041.2| 455|Homo sapiens Tu translation elongation
factor, mitochondrial protein.
Length = 455
Score = 30.3 bits (65), Expect = 7.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 442 STEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDV 621
ST A + A ++ A Y++N++ GC+ + N G M Q+R + + I V
Sbjct: 119 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM--PQTREHLLLARQIGV 176
Query: 622 RH 627
H
Sbjct: 177 EH 178
>BC009251-1|AAH09251.1| 417|Homo sapiens farnesyl-diphosphate
farnesyltransferase 1 protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>BC003573-1|AAH03573.1| 417|Homo sapiens farnesyl-diphosphate
farnesyltransferase 1 protein.
Length = 417
Score = 30.3 bits (65), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 522 TNIIYHISEIHSFLSCFRKRQVLGFCA 442
TN ++HI ++ ++LS R + V FCA
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCA 290
>BC001633-1|AAH01633.2| 455|Homo sapiens Tu translation elongation
factor, mitochondrial protein.
Length = 455
Score = 30.3 bits (65), Expect = 7.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 442 STEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDV 621
ST A + A ++ A Y++N++ GC+ + N G M Q+R + + I V
Sbjct: 119 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM--PQTREHLLLARQIGV 176
Query: 622 RH 627
H
Sbjct: 177 EH 178
>AK126937-1|BAC86755.1| 1127|Homo sapiens protein ( Homo sapiens
cDNA FLJ44990 fis, clone BRAWH3008559. ).
Length = 1127
Score = 30.3 bits (65), Expect = 7.3
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 466 LSEATKEAMYLRNVV--NNIGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDVRHHFVR 639
LS KE +NV ++ G C +FN+N L QS T+ +D H F
Sbjct: 269 LSMEIKEDFLCQNVEKQSSSGTNCSSDHVFNENGNLEVLVQSHRDGGSTEFVDHDHFFDE 328
Query: 640 DMCEQSVID 666
D+ Q+ ID
Sbjct: 329 DL--QAAID 335
>AB023164-1|BAA76791.3| 2330|Homo sapiens KIAA0947 protein protein.
Length = 2330
Score = 30.3 bits (65), Expect = 7.3
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 466 LSEATKEAMYLRNVV--NNIGVKCGCVTLFNDNQGAMKLAQSRSYHSRTKHIDVRHHFVR 639
LS KE +NV ++ G C +FN+N L QS T+ +D H F
Sbjct: 333 LSMEIKEDFLCQNVEKQSSSGTNCSSDHVFNENGNLEVLVQSHRDGGSTEFVDHDHFFDE 392
Query: 640 DMCEQSVID 666
D+ Q+ ID
Sbjct: 393 DL--QAAID 399
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,538,935
Number of Sequences: 237096
Number of extensions: 2174814
Number of successful extensions: 4374
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4374
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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