Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o07
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U40958-3|ABQ13075.1|  219|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z66496-3|CAA91279.2|  570|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    30   1.9  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    30   1.9  
Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U00049-6|AAM22030.1|  711|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    28   7.8  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    28   7.8  

>L23649-1|AAA27912.1|  568|Caenorhabditis elegans Hypothetical
           protein C02C2.4 protein.
          Length = 568

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 214 TSFFHPFAQQTHKVLVVMLQNQYSSTFLLTFYATVILIDANHTKTSLTN 68
           +S FHPF+++ H VL+ M+   + +TF+   +A  +    N T  ++ N
Sbjct: 38  SSLFHPFSRRLHIVLLCMI-GFFCTTFMRIHFALTMTCMVNSTALAVEN 85


>U40958-3|ABQ13075.1|  219|Caenorhabditis elegans Hypothetical
           protein F09F9.5 protein.
          Length = 219

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = -2

Query: 175 VLVVMLQNQYSSTFLLTFYATVILIDANHTKTSLT 71
           ++++++    ++TF+L F+  + L  + +TKT+LT
Sbjct: 143 IVIILISVACNTTFILKFFVDISLAQSEYTKTALT 177


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 194 CATNTQGSCGNASKPIFFNLPTNFLCHCNP 105
           C  N +G   +  KP F+N P    C+CNP
Sbjct: 676 CKGNFEGERCDRCKPNFYNFPICEECNCNP 705


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 194 CATNTQGSCGNASKPIFFNLPTNFLCHCNP 105
           C  N +G   +  KP F+N P    C+CNP
Sbjct: 676 CKGNFEGERCDRCKPNFYNFPICEECNCNP 705


>Z66496-3|CAA91279.2|  570|Caenorhabditis elegans Hypothetical
           protein E04D5.1a protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 367 HRVYLKQAGAPITWEARKQRTVALSSTEAEYLALSEATKEAMYLRNV 507
           +R + K   A +TW  R Q  + L+S E +    S   ++++YL N+
Sbjct: 217 NRTFFKSDKAVMTWNQRGQSLLILASVEVDKTNQSYYGEQSLYLINI 263


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 194 CATNTQGSCGNASKPIFFNLPTNFLCHCNP 105
           C  N +G   +  KP F+N P    C+CNP
Sbjct: 676 CKGNFEGERCDRCKPNFYNFPICEECNCNP 705


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 194 CATNTQGSCGNASKPIFFNLPTNFLCHCNP 105
           C  N +G   +  KP F+N P    C+CNP
Sbjct: 676 CKGNFEGERCDRCKPNFYNFPICEECNCNP 705


>Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical
           protein K04B12.3 protein.
          Length = 891

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
 Frame = +1

Query: 238 IILATNDEVWLHDVKRQLSNAFEMK-------DMGKISTCLGIEFSRDKEHRVYLKQAGA 396
           ++L  N +VW  D+ +  S  F  K       D  ++   +G E+   + HR ++   G 
Sbjct: 697 VLLDVNFDVWNRDLNKIRSEDFSRKCGKDNKDDSARVKLFVGFEYECSRGHRFFVDYNGE 756

Query: 397 PITW 408
           P+ +
Sbjct: 757 PLIY 760


>U00049-6|AAM22030.1|  711|Caenorhabditis elegans Hypothetical
           protein C18F10.2 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 458 YSASVLDNATVRCFRASQVIGAPACFKYTLCSLSRENSIP 339
           ++ S++  ATV    + Q IG+ AC K+ LCS S   S P
Sbjct: 209 FNISMMKTATV----SGQTIGSIACSKFKLCSFSAVTSNP 244


>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 206 FSSLCATNTQGSCGNASKPIFFNLPTNFLCHCNPD 102
           + +LCA+N   + GN +  +  N  +N+LC C+PD
Sbjct: 162 YDNLCASNPCQNSGNCTM-VLEN--SNYLCTCSPD 193


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 218 INIIFSSLCATNTQGSCGNASKPIFFNLPTNFLC 117
           ++  FS +CA   + +C N + P+  N  TN  C
Sbjct: 9   LSFYFSFICAQQPRFTCPNNANPLVSNGGTNLFC 42


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 415  RKQRTVALSSTEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLAQSRSY 594
            RK   ++  +T   Y  +S  T+ +  + N      V+  C T     QGA++   S+S 
Sbjct: 2863 RKSSKLSFEATNRNYYEVS--TQSSHLVMNPNGEETVEKTCETSLGSLQGAVRYGLSKSS 2920

Query: 595  HSR 603
            HSR
Sbjct: 2921 HSR 2923


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 711 GQNISRHFVCTQIFQINHTLFTHISNKMVSNINMLSARMIASTLCKLHS 565
           G N+     C Q+    +T F    N ++S I +L   MI   LC  HS
Sbjct: 358 GVNMIGVVKCAQMVSRQYTHFVMAVNSLISWIAILILPMIIGVLCPNHS 406


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 415  RKQRTVALSSTEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLAQSRSY 594
            RK   ++  +T   Y  +S  T+ +  + N      V+  C T     QGA++   S+S 
Sbjct: 2863 RKSSKLSFEATNRNYYEVS--TQSSHLVMNPNGEETVEKTCETSLGSLQGAVRYGLSKSS 2920

Query: 595  HSR 603
            HSR
Sbjct: 2921 HSR 2923


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 415  RKQRTVALSSTEAEYLALSEATKEAMYLRNVVNNIGVKCGCVTLFNDNQGAMKLAQSRSY 594
            RK   ++  +T   Y  +S  T+ +  + N      V+  C T     QGA++   S+S 
Sbjct: 2863 RKSSKLSFEATNRNYYEVS--TQSSHLVMNPNGEETVEKTCETSLGSLQGAVRYGLSKSS 2920

Query: 595  HSR 603
            HSR
Sbjct: 2921 HSR 2923


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,764,185
Number of Sequences: 27780
Number of extensions: 357060
Number of successful extensions: 982
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)