Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o07
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.059
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.0  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 28.7 bits (61), Expect = 0.059
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 346  EFSRDKEHRVYLKQAGAPITW-EARKQRTVALSSTEAEYLALSEATKEAMYLRNV 507
            E   D+E R YL+ A A +TW E R    +  +   A  +++   +   +Y RN+
Sbjct: 1171 EVELDRELRPYLRTAAAILTWNEKRFWERLRYAIPSAGDISIESKSSPLVYKRNI 1225


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 122 LCHCNPD*RKPYKDFFNKH 66
           +CH NPD ++ Y D  + +
Sbjct: 14  ICHGNPDAKRLYDDLLSNY 32


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 70  NTHYSHTHSMLRSS 29
           N HY+H H+  R S
Sbjct: 422 NNHYNHNHNQARHS 435


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 163 MLQNQYSSTFLLTFYATVILIDANHTKTSLTNTHYSHTHSMLRS 32
           +LQ +   +  + F    +L     T+T L  T++ HT+ +  S
Sbjct: 6   VLQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYES 49


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 163 MLQNQYSSTFLLTFYATVILIDANHTKTSLTNTHYSHTHSMLRS 32
           +LQ +   +  + F    +L     T+T L  T++ HT+ +  S
Sbjct: 6   VLQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYES 49


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 561 GCYEACTE*KLSF 599
           GC+EAC   KL F
Sbjct: 53  GCFEACVFQKLHF 65


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 561 GCYEACTE*KLSF 599
           GC+EAC   KL F
Sbjct: 53  GCFEACVFQKLHF 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,368
Number of Sequences: 438
Number of extensions: 4020
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)