Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o04
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    52   8e-08
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    31   0.12 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.0  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   3.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   4.6  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   4.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   8.0  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
 Frame = +1

Query: 370 ENKPFQRLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVK 549
           ++K    LP NV P HY L L P+LE FT+ GK  V + ++  +N I L+ ++L +    
Sbjct: 13  DDKNRNLLPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAA 72

Query: 550 LQYNDGSNSAIIPSSVELSTTDETASIYFSESL-LEGEATLYSEFTGEI 693
           L++  GS +     + E+S  DE   + F  ++     A L   FT  I
Sbjct: 73  LEW--GSQTV---WASEVSYGDERIVLQFPSTVPANSVAVLTLPFTARI 116


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = +1

Query: 319  YTARPTLAISKEKVT-MPENKPFQRLP---NNVIPKHYALELIPNLEKFTFKGK--TAVK 480
            Y    T  ++ E++  + E+   +RL    NN++  H  ++L+P L    F GK   +VK
Sbjct: 802  YVVNSTSKLTNEEINNVFESYDLKRLESYSNNLLDYHVIVDLLPKLAHLYFSGKFPDSVK 861

Query: 481  VSIVNPTNVIVLNSLDLDLKNVKLQYNDGSNSAIIPSSVELS 606
            +S V  + ++ L      +  ++ ++N  SN  ++   V+LS
Sbjct: 862  LSPVQQSVLLALGLQYKTIDTLEKEFNLPSNQ-LLAMLVKLS 902


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 538 KNVKLQYNDGSNSAIIPSSVELSTTDETASIYFSESLLEGEATLYS 675
           +N  L   D + ++    ++ +S TD  AS   S SLL     LYS
Sbjct: 47  RNGLLSLLDSNTTSASVQTIAISQTDNAASCIPSASLLSSSVVLYS 92


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 170 VKFLDWFITRESNVMKTTKSTLTSNICVSNQLLGSEILVESQQ 42
           V+FL WF+    N +   KST+     + +      + +ESQ+
Sbjct: 264 VEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQGFVRIESQK 306


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 209  RNSNVLGILLILRVKFLDWFITRESNVMKTTKSTLTSNICVSNQLLGSEILV 54
            +   ++GI+  L V    + ITR +   K+T+S     +C  +     E+L+
Sbjct: 1158 KTKTIIGIISALLVDLSRYHITRPNQQSKSTESKQQILLCAPSNAAVDEVLL 1209


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 589 SSVELSTTDETASIYFSESLLEGEATLYSEFTGEI 693
           SSVE STT   +S+     L EGE TL      EI
Sbjct: 90  SSVEKSTTIPNSSVVLDHLLNEGENTLEEVKPSEI 124


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 412  KHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLD--LDLKNVKLQYNDGS-NSAI 582
            +HY LEL  +L      G+T +  S    ++VIV   LD  +DL   + Q++D S NS  
Sbjct: 1522 EHYYLELKESLPGVLQNGQTDLDPSKEQMSSVIVSFLLDELMDLTETR-QFSDRSPNSEF 1580

Query: 583  IPSSVEL 603
             P +  L
Sbjct: 1581 TPENDSL 1587


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 451 FTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQYNDGSN 573
           F F     ++  +   TN+ +LNSLD +L  VK   +D S+
Sbjct: 131 FQFSNIEKLRKLVYQLTNISILNSLD-NLDKVKYLLHDSSS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,837
Number of Sequences: 5004
Number of extensions: 54354
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)