Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o03
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.089
SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         29   0.089
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    24   4.4  

>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 29.5 bits (63), Expect = 0.089
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = +3

Query: 132 SNHHHSYLYHCQH 170
           +NH+H++LYHCQ+
Sbjct: 78  NNHNHAFLYHCQY 90


>SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 88

 Score = 29.5 bits (63), Expect = 0.089
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 2  RCVTVTPKYKRIIIEFKLLYSI 67
          RCV + P+YK+ +I    +YSI
Sbjct: 5  RCVLIKPEYKKFLIHVNFIYSI 26


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 86  LCCKNVV*SVNKYRIIKPSPFVFIPLSTLQFRAATFT 196
           L CK ++  +N+   ++PSPF    ++T+Q+    FT
Sbjct: 728 LICKIMIAGLNE---VEPSPFSLPIVTTIQYFCDRFT 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,095,837
Number of Sequences: 5004
Number of extensions: 19566
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)