Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4o03
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0924 - 29449285-29449290,29449386-29449575,29449669-294497... 27 1.5
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 27 1.5
03_05_0225 + 22111269-22111327,22111587-22111638,22112148-221121... 27 1.5
03_03_0051 - 14091944-14091949,14092045-14092234,14092328-140924... 27 1.5
03_03_0049 + 14082358-14082613,14084662-14084795,14084883-140849... 27 1.5
03_06_0201 + 32318928-32319202,32319302-32319482,32319915-323199... 27 2.7
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 25 6.3
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229... 25 6.3
>04_04_0924 -
29449285-29449290,29449386-29449575,29449669-29449772,
29449845-29449976,29450064-29450162,29450439-29450451,
29450688-29450719,29450802-29450921,29450992-29451105,
29451192-29451325,29454014-29454251
Length = 393
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 132 SNHHHSYLYHCQHYNSELPLLHFT 203
SNH S H QH+ PLLH T
Sbjct: 115 SNHDESSDNHDQHFEENDPLLHLT 138
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 132 SNHHHSYLYHCQHYNSELPLLHFT 203
SNH S H QH+ PLLH T
Sbjct: 35 SNHDESSDNHDQHFEENDPLLHLT 58
>03_05_0225 +
22111269-22111327,22111587-22111638,22112148-22112151,
22112981-22113114,22113201-22113314,22113386-22113505,
22113587-22113618,22113854-22113866,22114144-22114242,
22114388-22114464,22114733-22114922,22115020-22115025
Length = 299
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 132 SNHHHSYLYHCQHYNSELPLLHFT 203
SNH S H QH+ PLLH T
Sbjct: 74 SNHDESSDNHDQHFEENDPLLHLT 97
>03_03_0051 -
14091944-14091949,14092045-14092234,14092328-14092431,
14092503-14092634,14092721-14092819,14093096-14093108,
14093344-14093375,14093458-14093577,14093648-14093761,
14093848-14093981,14095005-14095047,14095394-14095445,
14095703-14095761
Length = 365
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 132 SNHHHSYLYHCQHYNSELPLLHFT 203
SNH S H QH+ PLLH T
Sbjct: 87 SNHDESSDNHDQHFEENDPLLHLT 110
>03_03_0049 +
14082358-14082613,14084662-14084795,14084883-14084996,
14085067-14085186,14085269-14085300,14085536-14085548,
14085825-14085923,14086010-14086141,14086213-14086316,
14086410-14086599,14086695-14086700
Length = 399
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 132 SNHHHSYLYHCQHYNSELPLLHFT 203
SNH S H QH+ PLLH T
Sbjct: 121 SNHDESSDNHDQHFEENDPLLHLT 144
>03_06_0201 +
32318928-32319202,32319302-32319482,32319915-32319987,
32320083-32320262,32320908-32321005,32321433-32321530,
32321615-32321657,32322131-32322189,32322238-32322331
Length = 366
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 61 VK*FKFNNYSLILWCYCDTS 2
V+ F FNN + W +CD+S
Sbjct: 272 VQGFSFNNSDYLSWAFCDSS 291
>08_02_1123 +
24474434-24474538,24474800-24474860,24475050-24475477,
24475915-24476231,24476991-24477216,24477302-24477547,
24477635-24477745,24478051-24478182,24478297-24478325,
24478352-24478502
Length = 601
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 137 PSPFVFIPLSTLQFRAATFTFYLLYIAT 220
P P F+P L R A F F+L +A+
Sbjct: 83 PKPHNFVPPKILNLRVAFFFFFLRKLAS 110
>05_01_0294 -
2291175-2291223,2291591-2292039,2292143-2292211,
2292397-2292449,2292492-2294478
Length = 868
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 112 CK*ISNNQTITIRIYTIVNITIPSCH 189
C+ +N+++ + TI+++TIP CH
Sbjct: 346 CRKATNDESGGDLLSTIIDLTIPCCH 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,881,096
Number of Sequences: 37544
Number of extensions: 92289
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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