Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o03
         (274 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   0.34 
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    26   3.2  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical ...    25   7.3  
AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 132  SNHHHSYLYHCQHYNSELP 188
            +NHH+S+ Y   HYN +LP
Sbjct: 1324 NNHHYSHNYSYPHYNIQLP 1342


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 132 SNHHHSYLYHCQHYNSELP 188
           SNHHH + +H  H+ S LP
Sbjct: 675 SNHHHHH-HHSHHHASSLP 692


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
           protein C44E4.1a protein.
          Length = 2712

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 225 H*VAIYNK*NVKVAARNCNVDNGINTNGDGLIIRYLFTDQTTFL 94
           H ++++N  N  +   N     G++ NGDG+ + Y  T    F+
Sbjct: 100 HNISVFNAENNSIFLTNVVNTPGMDMNGDGVSLHYSSTFNLLFV 143


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
           protein C44E4.1c protein.
          Length = 2710

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 225 H*VAIYNK*NVKVAARNCNVDNGINTNGDGLIIRYLFTDQTTFL 94
           H ++++N  N  +   N     G++ NGDG+ + Y  T    F+
Sbjct: 100 HNISVFNAENNSIFLTNVVNTPGMDMNGDGVSLHYSSTFNLLFV 143


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
           protein C05D12.2 protein.
          Length = 1052

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 50  KLLYSIAKQS*YLCCKNVV*SVNKYRIIKPSPFVFI 157
           +L   I+K +   C K  V S+N  R+ +P  F+FI
Sbjct: 507 ELTTKISKNNTDTCSKKNVDSINDPRLQEPKQFIFI 542


>U97012-7|AAK39139.2|  387|Caenorhabditis elegans Hypothetical
           protein C04E6.4 protein.
          Length = 387

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 17  TPKYKRIIIEFKLLYSI-AKQS*YLCCKNVV*SVNKYRIIKPSPFVFIPLSTLQFRAATF 193
           T   K ++++ KLL  I AK++ Y C K      N   ++K  P   + +STL+    + 
Sbjct: 205 TQPTKFLMVKDKLLEQINAKKALYTCDKKTEAYCNYRNVLKHLPGQLMKISTLEVEHVSA 264

Query: 194 TFYLLYIAT 220
              L Y  T
Sbjct: 265 LCKLNYSKT 273


>AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical
           protein Y70G10A.2 protein.
          Length = 711

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 157 TIVNITIPSCHFYILLIIYCHLM 225
           T+  IT  +C FY + I +C+++
Sbjct: 274 TVFAITQAACRFYFIAIHFCYVL 296


>AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.4 protein.
          Length = 305

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 127 NNQTITIRIYTIVNITIPSCH 189
           +N+TIT+  +  V++T+P+ H
Sbjct: 233 SNKTITVEAHPSVDLTMPTVH 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,904,182
Number of Sequences: 27780
Number of extensions: 104379
Number of successful extensions: 228
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)