Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o02
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...   201   7e-53
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    50   2e-07
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    29   0.84 
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    29   0.84 
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   1.1  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    28   1.5  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   2.6  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    27   2.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.9  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   7.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   7.8  

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score =  201 bits (491), Expect = 7e-53
 Identities = 100/173 (57%), Positives = 132/173 (76%), Gaps = 6/173 (3%)
 Frame = +3

Query: 195 MADSQEDLLLKIQEQGDLVRKLKAAKDSNERVKEEVSKLLALKAQLV--TEDAGPQK--- 359
           MADS  D+  +I  QG+LVR LK+   S E + +EV+KLL LK   +  +E +G +K   
Sbjct: 1   MADSLVDINERITSQGNLVRSLKSQGASKEDIDKEVAKLLQLKNLKLGGSEVSGKKKDTS 60

Query: 360 FTLKTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKL 539
           FTLKTPKGT+D+  + + +R ++   +  +F+RHG   +DTPVFELK++L+GKYGEDSKL
Sbjct: 61  FTLKTPKGTKDWCDKDVVLREHIFSTVTEIFKRHGGVTLDTPVFELKEILSGKYGEDSKL 120

Query: 540 IYDLKDQGGEILSLRYDLTVPLARYLAMN-KITTLKRYHIAKVYRRDNPAMTR 695
           IYDLKDQGGE+ SLRYDLTVP AR+LAMN K+T++KR+HIAKVYRRD PAMT+
Sbjct: 121 IYDLKDQGGELCSLRYDLTVPFARWLAMNPKVTSIKRFHIAKVYRRDQPAMTK 173


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 29/82 (35%), Positives = 46/82 (56%)
 Frame = +3

Query: 426  VLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLRYDLTVPL 605
            V D ++ VFRRHGA+  ++ +   K   + +Y +D   +  L D+ G +L L YD  +P 
Sbjct: 990  VRDHVVKVFRRHGAKERESHILFPK---SSQYDKDQASV-SLLDKNGTLLQLPYDTVLPY 1045

Query: 606  ARYLAMNKITTLKRYHIAKVYR 671
            AR +A N +   K Y I+ V+R
Sbjct: 1046 ARNVARNAVEEEKTYLISDVFR 1067


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 613 YRAKGTVKSYLNERISPPWSFKSYINFESSPYFPVSTSFSSKTGVS 476
           YR++G V   LN    P    +  + F   P FPV+TS  +KT VS
Sbjct: 57  YRSEGEVVDLLN----PKDELEEPL-FSEEPLFPVTTSIPTKTAVS 97


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 414 IRNNVLDKIITVFR-RHGAECIDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLRYD 590
           ++N VL  I++  +    ++      +E K +L  ++   +KL+  L   G EILS+ +D
Sbjct: 466 LKNAVLSSIVSTIQIEPNSDLTGYDYYEYKRLLYNEWERFAKLVAYLDHFGDEILSINFD 525

Query: 591 LTVPLARYLAMNKITTLK 644
            +  +      NK+  ++
Sbjct: 526 PSNAVTYINYANKVAFIR 543


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 455 PKNCNNFIQYIITYCHLLWVVVSCSLWCFKSKL 357
           P+N   F+  II Y + +  ++ CSLW + +KL
Sbjct: 318 PQNLQPFVFMIIQYLYSITTMLPCSLW-YNNKL 349


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 97  FSLVTFIFCFNTNHN 53
           FSLV  IFC NTN+N
Sbjct: 371 FSLVALIFCSNTNNN 385


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +3

Query: 441 ITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLRYDLTVPLARYLA 620
           + +FR H A  +DT      D +    G+DSK++     +   ++   Y+   P+A    
Sbjct: 74  VNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPEDYTVME-PYEDVHPIAELKG 132

Query: 621 MNKITTLKRYH 653
            ++   L +YH
Sbjct: 133 HSRKVGLVQYH 143


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 204 SQEDLLLKIQEQGDLVRKLKAAKDSNERVK 293
           S EDL   ++E GD + K+   KD+ ER+K
Sbjct: 577 SNEDLKSALKEYGDSIGKVFNRKDAIERLK 606


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 384  TRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDV--LTGKYGEDSKLI 542
            TRDY+ +Q+  R NV+  +++ F +  A+ ++ P   +K +  L G Y E   L+
Sbjct: 2511 TRDYHIKQVNNRPNVISTLVSSFVKCAAK-LELPPHLVKYLGKLYGVYHESVSLL 2564


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 147 VKARKCSS*VANCRSIISAWLLSFFVLTPTITNKFYRLYFV 25
           +K  +C S + +CR  +  ++ S      T    F RL+F+
Sbjct: 42  MKHEECKSQIYDCRMAVKIYVCSITANKSTNLKHFVRLFFL 82


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +3

Query: 462 GAECIDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLRYDLTVPLARYLAMNKITTL 641
           G++ I      L+ V   + G+ S  +  +        S + D+  PLA    ++ + TL
Sbjct: 157 GSDLIAILALCLRSVSISRIGQKSARLEHVDTMNSSYSSYKTDVKYPLALDDKLSSVPTL 216

Query: 642 KRYHIA 659
            ++H A
Sbjct: 217 PKFHDA 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,448
Number of Sequences: 5004
Number of extensions: 59407
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)