Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o02
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286...   161   6e-40
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689...    56   4e-08
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    48   7e-06
10_08_0311 + 16671641-16671772,16671868-16671957,16672073-166721...    29   4.7  
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401...    29   4.7  

>05_01_0366 -
           2867953-2868252,2868329-2868469,2868808-2869089,
           2869177-2869569,2869796-2869975,2870149-2871510
          Length = 885

 Score =  161 bits (390), Expect = 6e-40
 Identities = 74/109 (67%), Positives = 86/109 (78%)
 Frame = +3

Query: 369 KTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYD 548
           K PKGTRD+  +QM IR +    I  VF+ HGA  +DTPVFEL++ L GKYGEDSKLIYD
Sbjct: 451 KIPKGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTPVFELRETLMGKYGEDSKLIYD 510

Query: 549 LKDQGGEILSLRYDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTR 695
           L DQGGE+ SLRYDLTVP ARY+AMN I++LKRY IAKVYRRDNP+  R
Sbjct: 511 LADQGGELCSLRYDLTVPFARYVAMNNISSLKRYQIAKVYRRDNPSKGR 559


>02_05_0790 -
           31768131-31768269,31768343-31768503,31768845-31768973,
           31769770-31769912,31770215-31770332,31771070-31771144,
           31771528-31771620,31771750-31771879,31772038-31772126,
           31772411-31772506,31772610-31772900
          Length = 487

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
 Frame = +3

Query: 348 GPQKFTLKTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGE 527
           G     +  P+GTRD+ P+ M +R  + D+   V R    E +D PV E + +   K GE
Sbjct: 65  GASVVDVNPPRGTRDFPPEDMRLRTWLFDQFREVSRVMAFEEVDFPVLESEALFIRKAGE 124

Query: 528 D-SKLIYDLKDQGGEILSLRYDLTVPLAR 611
           + ++ +Y+ +D+GG  + LR ++T  LAR
Sbjct: 125 EITQQLYNFEDKGGRRVVLRPEITPSLAR 153


>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
            24593138-24593242,24593693-24593815,24594163-24594630,
            24595226-24595351,24595430-24595516,24595615-24595701,
            24595807-24595903,24596519-24596636,24596923-24596995,
            24597504-24597566,24597666-24597832,24598444-24598631,
            24598909-24599057,24599193-24599442,24599597-24599855,
            24599977-24600073,24606696-24606776,24606914-24606970,
            24607264-24607395,24607476-24607562,24607941-24608049,
            24608134-24608270,24608841-24608945,24609566-24609654,
            24609757-24609859,24609960-24610064,24610282-24610293,
            24611013-24611078
          Length = 1279

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
 Frame = +3

Query: 420  NNVLDKIITV----FRRHGAECID-TPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLR 584
            + +LD II V    F+RH A+    +P+  L+   T   G+  K++     QGGE+L L 
Sbjct: 849  SELLDSIIEVSKEVFKRHCAKRFQISPLHTLEGKFTENRGKTVKIL----TQGGEMLELC 904

Query: 585  YDLTVPLARYLAMNKITTLKRYHIAKVYRR 674
            Y+L  P    +  N+I + KRY ++ V+RR
Sbjct: 905  YELRTPFVMSVVANQILSFKRYEVSWVHRR 934


>10_08_0311 +
           16671641-16671772,16671868-16671957,16672073-16672150,
           16672299-16672373,16672423-16672466,16672606-16672658,
           16673342-16673463,16673687-16673803,16673912-16674038,
           16674150-16674253,16674379-16674514,16674912-16674928
          Length = 364

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 210 EDLLLKIQEQGDLVRKLKAAKDSNERVKEEVSKLLALKAQLVTEDAGPQKFT 365
           +++ L + +Q D ++         ER +EE+  LL+L + +V     P+K+T
Sbjct: 189 DEMALAVAKQADQMKIPILVDAEPERTREELGGLLSLASYIVCNGKFPEKWT 240


>01_04_0038 -
           15339047-15339230,15339683-15339741,15340031-15340160,
           15340248-15340498,15340632-15341225,15342050-15342511
          Length = 559

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 228 IQEQGDLVRKLKAAKDSNERVKEEVSKL 311
           ++E+GD V +LKAAK S + +   V++L
Sbjct: 232 VKEKGDAVAQLKAAKASKQEITAAVAEL 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,417,820
Number of Sequences: 37544
Number of extensions: 311124
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)