Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4o02
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 489 FELKDVLTGKYGEDSKLIYDLKDQGGE 569
           F+ K  +   YG D ++I    D+GG+
Sbjct: 555 FKSKPPVATMYGSDEEIINSSNDEGGK 581


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 431 QYIITYCHLLWVVVSCSLW 375
           +Y+ TY HLL+  V   +W
Sbjct: 45  RYMFTYLHLLYQDVHVMIW 63


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 120 VANCRSIISAWLLSFFVLTPTITNKFYRLYF 28
           VAN   +    L+SFF  +P ++NK    YF
Sbjct: 227 VANLLRLFRIPLVSFFSTSPELSNKQRFEYF 257


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 543 ILILNPHHTSQ*AHPLAQ--KQVYQY 472
           ILILN HH +   H +++  K V+ Y
Sbjct: 313 ILILNYHHRNADTHEMSEWVKVVFLY 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,698
Number of Sequences: 438
Number of extensions: 3585
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)