Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4n24
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    28   1.1  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.9  

>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/66 (31%), Positives = 35/66 (53%)
 Frame = +1

Query: 253 ELDRNWSNKQRSLLALKHEDIQISSPRKVYFIRIADKKYCDVDMAFLALKWVPINSVNVL 432
           EL  N+S+K  +L      + ++SS RKVYF++    +Y  +   +L+L  +   S   +
Sbjct: 236 ELPTNYSDKTLTLW-----ENELSSMRKVYFVKY-KTEYEFLQKRYLSLARIMFVSKKEM 289

Query: 433 LFTEIF 450
           LFT  F
Sbjct: 290 LFTSQF 295


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 531 NFKSGHLKISNSPLWYAVWCVFAMKSSEYF-GEQQNVNTIDWHPL 400
           NF S +L   +      V+ + AMK      G +++VN + WHPL
Sbjct: 259 NFGSNYLATVSRDSTCRVFDLRAMKDVRVLRGHEKDVNCVTWHPL 303



 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 441 GEQQNVNTIDWHPLQG 394
           G   +V T+DWHP +G
Sbjct: 204 GHGWDVKTVDWHPSKG 219


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 290 NERCLLLQLRSNSRNKLNRAAFVSKPFNSEN*PSLIT 180
           N+R  L  L+++ RN L+R    + PF S+N  SL T
Sbjct: 229 NDRPPLPVLKNSERNLLHRQLLSNHPFFSQNNVSLST 265


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 190 DGQFSELNGLLTKAARLSLLRELDR-NWSNKQRSLLALKHEDIQISSPRKVYFIRIADKK 366
           D  + E+   L   +    L+E +R  W N  ++    K+E+I     R++YFI  ADK+
Sbjct: 140 DLAYPEIQQALQSISHSIDLQERERIEWENTIQTSSQQKYEEIPDIQARRLYFIE-ADKE 198


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = +2

Query: 8   YTRCEYLTFKISVFYIQFWIII*QNGKLFIV*NK----MLKIQL*KSSIIAMGARQYHGL 175
           Y +C Y  F  SVFYI   + I    ++F + NK      ++    SSI+     Q++ L
Sbjct: 182 YFQCSYSVFYASVFYILLGVFI----RVFYLVNKEKFEKKELAFLFSSIVVACLIQFNVL 237

Query: 176 HKL*AMVSSQN*TVCLRKQLD*VYCVNW 259
                 +S    T+    Q   ++C+NW
Sbjct: 238 PLGTINLSVTRFTILCFMQ---IFCINW 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,903
Number of Sequences: 5004
Number of extensions: 47513
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)