Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4n20
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0505 + 25719959-25720052,25721548-25722266                       30   1.2  
03_02_0091 + 5574528-5577254                                           29   2.1  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    29   2.7  
05_04_0293 - 19898254-19898819,19899698-19899701                       28   4.8  
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    27   8.4  
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285...    27   8.4  
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757...    27   8.4  
03_02_0246 - 6772369-6772808,6773223-6775788                           27   8.4  

>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 301 AVPALVLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGSHLATLR 441
           A P     R+    RR  D PRPAR   H +VTL   H  S    +R
Sbjct: 79  ATPPKSYGRLLGRRRRHRDLPRPARGVDHPAVTLRGLHPSSETGDIR 125


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 145 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNKVRFA 294
           + L   V  AALW   ++  A  R  VC G +S     K   FF + R A
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFERARDA 530


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 113 NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFDS 292
           N  +SL+ L      HV S +PY    I RLR+SAP    +  +A W+    +      +
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRKSIHT 599

Query: 293 LP 298
           +P
Sbjct: 600 VP 601


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 130 PPFACILLQSCVLHAAL 180
           PP AC +LQ C LH+ L
Sbjct: 82  PPLACAILQECELHSYL 98


>06_03_0927 +
           26015956-26018230,26018323-26018471,26018550-26018618,
           26018701-26018853,26018927-26019090,26019207-26019354,
           26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 214 GGPQSSYL*HTIGPHGV 164
           GGP SSY+  T+GP GV
Sbjct: 606 GGPYSSYVVATVGPGGV 622


>05_05_0237 -
           23526613-23527178,23527979-23528066,23528384-23528527,
           23528674-23528790,23528860-23528970,23530911-23531062,
           23531362-23531450,23531664-23531761
          Length = 454

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 268 WQSCKPFRLKADRGKHWSGGPQS 200
           W   +P R+   +G  W G PQS
Sbjct: 107 WNGMRPERVSFSQGPGWQGAPQS 129


>03_06_0415 -
           33775143-33775305,33775438-33775565,33775654-33775761,
           33775809-33775909,33776265-33776805,33777290-33777847
          Length = 532

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 439 RF*KKKSADGNSGAEEGGS 495
           R  KK++ DG+SG E+GGS
Sbjct: 212 RIPKKRTLDGDSGDEDGGS 230


>03_02_0246 - 6772369-6772808,6773223-6775788
          Length = 1001

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 183 VCYKYEDCGPPLQCLPRSAFKRNGLQDCQF 272
           +CY + DC PP+  L R     N L D +F
Sbjct: 793 LCYLHHDCSPPI--LHRDVKSNNILLDAEF 820


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,418
Number of Sequences: 37544
Number of extensions: 275315
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)