Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4n19
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   3.5  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    24   8.0  

>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 229 EFADVVNRFASRRARDVLIQKY 294
           E A +VNRF  RR  D+L  KY
Sbjct: 497 ELAKIVNRFIIRRTNDIL-SKY 517


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 120 DRNISSSKGLQTFEMAVQQRYGYVVRK*IN 209
           D + S + G  TFE A+Q R  Y  ++  N
Sbjct: 108 DGHTSYNNGANTFEEAIQNRVDYSTKQNYN 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.128    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,556
Number of Sequences: 5004
Number of extensions: 32299
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)