Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4n12
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    30   0.37 
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    28   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.4  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   4.5  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   4.5  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    26   6.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   7.9  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   7.9  

>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
 Frame = +1

Query: 202 HGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAP----VAEGPPMNQ 369
           HG  P   +  S P+  +P    N  + QYY   S IN      VA     V+  P    
Sbjct: 61  HGA-PGHQTSASQPSTVMPALETNASNAQYYPAYSVINGNNSVQVASPAYTVSHSPHSFS 119

Query: 370 DPTKKAQPG-GIKPDTVCFHCAPTP 441
           +P   A P     P+ VC +C P P
Sbjct: 120 NPRYVAVPQKSTSPNQVCSYCEPLP 144


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 214 PPLMSPRSVPTPEIPRGPDNQ 276
           P  ++P+  P+PE+P+ PDN+
Sbjct: 236 PSNVTPKKKPSPEVPKLPDNR 256


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 313  NSVFPPIVAPVAEGPPMNQDPTKKAQPGGIKPDTVCFHCAPTPGPP 450
            N   P ++  VA+ PP +  P   A    + P    F   P+P PP
Sbjct: 1491 NVPVPSMIPSVAQQPPSSVAPAT-APSSTLPPSQSSFAHVPSPAPP 1535


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = +3

Query: 330 NSGTCSGRSA----HEPRSNKESTARWDQARYGVFPLRSDPWSALVV 458
           ++ +CS  S     HE  S      RWD A     PL    W+ LVV
Sbjct: 39  SNDSCSSESGDLKIHEVNSEGHIIVRWDDANDPENPLNWPLWAKLVV 85


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/89 (21%), Positives = 40/89 (44%)
 Frame = +1

Query: 100 FTV*DMSKPKWDFRDISKGLKIFRDILLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQY 279
           F + D +  +W  +   +GL I  D++         + P   S   +P P+   G  +++
Sbjct: 78  FPLLDNAVYEWLQQREVEGLPISGDMIKQAATRFWSKIPAYAS---LPLPDFSNGWLDKF 134

Query: 280 SKQYYYKRSAINSVFPPIVAPVAEGPPMN 366
            +++Y ++SA+N     I   V    P++
Sbjct: 135 RRRHYIQQSAVNQALESIKFEVFREYPVH 163


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 174 ITKNFKPFRDVSEIPLWLRHILHCKSINLQAKLLLVYMPDL 52
           IT + + +R V+   LW RH     +  L+A  +L+  P++
Sbjct: 702 ITNDVRLWRIVARYYLWRRHFAESLNATLKAYRILISSPNV 742


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 137 KSHFGLDISYTVNQSIYRQN 78
           K +FG DIS T    +YRQ+
Sbjct: 481 KDNFGSDISATTKHELYRQS 500


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 295 YKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQ 390
           +  S +   F PI+AP   G P ++   K+A+
Sbjct: 99  FTNSELPGAFRPIIAPRVFGAPYDEQAAKEAE 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,696
Number of Sequences: 5004
Number of extensions: 63564
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)