Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4n12
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical p... 33 0.20
U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine rece... 33 0.20
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.4
U34778-1|AAA97606.1| 418|Caenorhabditis elegans sma-2 protein. 30 1.4
U10327-1|AAC46583.1| 418|Caenorhabditis elegans MAD homolog 1 p... 30 1.4
M98552-8|AAA28204.3| 418|Caenorhabditis elegans Small protein 2... 30 1.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.4
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 30 1.4
Z81074-8|CAB03043.1| 413|Caenorhabditis elegans Hypothetical pr... 29 2.4
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 29 4.2
U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protei... 28 5.6
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 28 5.6
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 28 5.6
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 5.6
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 5.6
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 5.6
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 28 5.6
Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical p... 28 7.4
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 28 7.4
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF022967-4|AAB69879.2| 117|Caenorhabditis elegans Hypothetical ... 28 7.4
Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical p... 27 9.8
Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical pr... 27 9.8
U58758-11|AAB93425.2| 206|Caenorhabditis elegans Hypothetical p... 27 9.8
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 9.8
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 9.8
AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical ... 27 9.8
AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H... 27 9.8
>U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical
protein C27H5.6 protein.
Length = 322
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 372 ILVHGRTFRYRCHYWWKHRIYCASFIIILLGILVIRA 262
+L R YR + W++R+Y +SF I+L G+L A
Sbjct: 119 VLAVNRVSWYRSRWTWRNRLYLSSFGIVLCGLLTFIA 155
>U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 7 protein.
Length = 339
Score = 33.1 bits (72), Expect = 0.20
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -2
Query: 411 IWLDPTGLCFLCWILVHGRTFRYRCHY----WWKHRIYCA-SFIIILLGILVIRATRYF 250
+WL PT L L WI++ R RY Y +W C S I+ILL + V+R YF
Sbjct: 35 LWLIPT-LFLLVWIIITTRV-RYPSQYSNLPYWILTADCVVSIILILLDLFVVRLFLYF 91
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +1
Query: 232 RSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVA--PVAEG-PPMNQDPTKKAQPGGI 402
+ + P+IP P + + + +S PPI P G PP+ P PGG+
Sbjct: 676 KHINDPKIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGL 735
Query: 403 KPDTVCFHCAPTPGPP 450
P T P P PP
Sbjct: 736 PPIT----GGPPPPPP 747
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +1
Query: 232 RSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVA--PVAEG-PPMNQDPTKKAQPGGI 402
+ + P+IP P + + + +S PPI P G PP+ P PGG+
Sbjct: 676 KHINDPKIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGL 735
Query: 403 KPDTVCFHCAPTPGPP 450
P T P P PP
Sbjct: 736 PPIT----GGPPPPPP 747
>U34778-1|AAA97606.1| 418|Caenorhabditis elegans sma-2 protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 289 YYYKRSAINSVFPPIVAP-VAEGPPMNQDPT 378
Y+YKR V PP++ P +E PP PT
Sbjct: 123 YHYKRVHATGVLPPVLVPRYSEKPPQEVPPT 153
>U10327-1|AAC46583.1| 418|Caenorhabditis elegans MAD homolog 1
protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 289 YYYKRSAINSVFPPIVAP-VAEGPPMNQDPT 378
Y+YKR V PP++ P +E PP PT
Sbjct: 123 YHYKRVHATGVLPPVLVPRYSEKPPQEVPPT 153
>M98552-8|AAA28204.3| 418|Caenorhabditis elegans Small protein 2
protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 289 YYYKRSAINSVFPPIVAP-VAEGPPMNQDPT 378
Y+YKR V PP++ P +E PP PT
Sbjct: 123 YHYKRVHATGVLPPVLVPRYSEKPPQEVPPT 153
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +1
Query: 232 RSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVA--PVAEG-PPMNQDPTKKAQPGGI 402
+ + P+IP P + + + +S PPI P G PP+ P PGG+
Sbjct: 259 KHINDPKIPLPPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGL 318
Query: 403 KPDTVCFHCAPTPGPP 450
P T P P PP
Sbjct: 319 PPIT----GGPPPPPP 330
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 307 AINSVFPPIVAPVAEGPPMNQDPTKKAQPGGIKPDTVCFHCAPTPGPPWSWDGHQYY 477
+I +V PP + G P P PG I TV + PTP PW++ YY
Sbjct: 131 SIVTVTPPSPSVTPGGRP-GSTPPATFPPGSIS--TVRYTPGPTPPGPWTYTAPPYY 184
>Z81074-8|CAB03043.1| 413|Caenorhabditis elegans Hypothetical
protein F32B6.9 protein.
Length = 413
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 202 HGRFPPLMSPRSVPTPEIPRGPDNQYSKQ 288
H PP + P P IP+ P ++YSKQ
Sbjct: 343 HEMHPPTKDGETSPIPRIPQLPHSKYSKQ 371
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +1
Query: 229 PRSVPTPEIPRGPDNQYSKQY-----YYKRSAINSVFPPIVAPVAEGPPMNQDP 375
P P PE P G YSK+ +Y + F P +P PP+ DP
Sbjct: 103 PARFPRPESPSGDSPSYSKKSRSFRDFYPSLSSTPSFDPAQSPHTPHPPVLPDP 156
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 172 DILLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAE 351
D+LLG+ + PP + R+ + +G ++Q S+ PPI P+ E
Sbjct: 986 DVLLGQGSGVCSTSPP--ATRTSEDQDSTQGSEDQSDPTSRIPTCFEVSMDPPISEPIIE 1043
Query: 352 GPPMNQDP 375
NQDP
Sbjct: 1044 AAIKNQDP 1051
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 172 DILLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAE 351
D+LLG+ + PP + R+ + +G ++Q S+ PPI P+ E
Sbjct: 986 DVLLGQGSGVCSTSPP--ATRTSEDQDSTQGSEDQSDPTSRIPTCFEVSMDPPISEPIIE 1043
Query: 352 GPPMNQDP 375
NQDP
Sbjct: 1044 AAIKNQDP 1051
>U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protein
1, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 300 TKRNKF--CVSTNSGTCSGRSAHEPRSNKESTARWDQARY 413
++R+ F C + +S TCS S+ PR ES+ ++R+
Sbjct: 153 SQRHSFSDCTTDSSSTCSRLSSESPRYTSESSTGTHESRF 192
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 300 TKRNKF--CVSTNSGTCSGRSAHEPRSNKESTARWDQARY 413
++R+ F C + +S TCS S+ PR ES+ ++R+
Sbjct: 376 SQRHSFSDCTTDSSSTCSRLSSESPRYTSESSTGTHESRF 415
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 300 TKRNKF--CVSTNSGTCSGRSAHEPRSNKESTARWDQARY 413
++R+ F C + +S TCS S+ PR ES+ ++R+
Sbjct: 466 SQRHSFSDCTTDSSSTCSRLSSESPRYTSESSTGTHESRF 505
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 179 KISRKILSPLEMSLKSHFGLDISYTVNQSIYRQNFYWFICQIYKI 45
+I IL L++S KSHF L + Y++ R + C+I I
Sbjct: 232 QILESILEKLQISAKSHFSLAVEYSLGARTSRISLLRPDCKIKSI 276
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 179 KISRKILSPLEMSLKSHFGLDISYTVNQSIYRQNFYWFICQIYKI 45
+I IL L++S KSHF L + Y++ R + C+I I
Sbjct: 232 QILESILEKLQISAKSHFSLAVEYSLGARTSRISLLRPDCKIKSI 276
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 179 KISRKILSPLEMSLKSHFGLDISYTVNQSIYRQNFYWFICQIYKI 45
+I IL L++S KSHF L + Y++ R + C+I I
Sbjct: 271 QILESILEKLQISAKSHFSLAVEYSLGARTSRISLLRPDCKIKSI 315
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 337 APVAEGPPMNQDPTKKAQPGGIKPDTVCFHC-APTPGP 447
AP A G P QD + QP G PD+ CF C A PGP
Sbjct: 145 APGAPGNP-GQD-AQDNQPAG--PDSFCFDCPAGPPGP 178
>Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 178 LLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGP 357
L+G ++ RF P + R+ T +P P + YY R++ + AP G
Sbjct: 93 LVGNSYDPPVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTSGYAAGQQFYAPSLSGV 152
Query: 358 PMNQDPTKKAQ 390
P Q AQ
Sbjct: 153 PNTQQLILAAQ 163
>Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical
protein M04G12.4b protein.
Length = 550
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 178 LLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGP 357
L+G ++ RF P + R+ T +P P + YY R++ + AP G
Sbjct: 64 LVGNSYDPPVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTSGYAAGQQFYAPSLSGV 123
Query: 358 PMNQDPTKKAQ 390
P Q AQ
Sbjct: 124 PNTQQLILAAQ 134
>Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +1
Query: 178 LLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGP 357
L+G ++ RF P + R+ T +P P + YY R++ + AP G
Sbjct: 93 LVGNSYDPPVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTSGYAAGQQFYAPSLSGV 152
Query: 358 PMNQDPTKKAQ 390
P Q AQ
Sbjct: 153 PNTQQLILAAQ 163
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 214 PPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKA-- 387
P +PRS P PR P + + ++++ PP V P ++ + + +A
Sbjct: 271 PDQPAPRSKILPWRPRTPAGHRDRSPSSPMAHLDNIQPPSPIQVVSNPTLSSELSSRASR 330
Query: 388 -QPGGIKPDTVCFHCAPTPGP 447
QPG +P + + T P
Sbjct: 331 DQPGPSRPRSQSANVRETYAP 351
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 328 PIVAPVAEGPPMNQDPTKKAQPGGIKPDTVCFHCAPTP 441
P++A A P + P KKA P KPD PTP
Sbjct: 1010 PVLAKKAPAKPRDPSP-KKAAPVAAKPDPKIPEVPPTP 1046
>AF022967-4|AAB69879.2| 117|Caenorhabditis elegans Hypothetical
protein C13A2.7 protein.
Length = 117
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 366 VHGRTFRYRCHYWWKHRIYCASFIIILLGIL-VIRATRY 253
+H R+FR + W IYCA+ + I + I +I+A+ +
Sbjct: 1 MHLRSFRIFSNKLWNILIYCATIVFIFIVIAKIIKASTF 39
>Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical
protein K08E3.8 protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +1
Query: 358 PMNQDPTKKAQPGGIKPDTV----CFHCAPTPGPPWSWDGHQY 474
PM+ PT ++PG + P + H + PG P S HQY
Sbjct: 124 PMSLPPTHVSRPGSVAPPSSVPVNLQHTSGAPGLPGSQMEHQY 166
>Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical
protein K09C8.1 protein.
Length = 783
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 309 CASFIIILLGILVIRATRYFW 247
C S I I+LG++++ +FW
Sbjct: 399 CESLIFIILGVMLVNEREWFW 419
>U58758-11|AAB93425.2| 206|Caenorhabditis elegans Hypothetical
protein ZK1127.3 protein.
Length = 206
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 227 DIRGGNRP*RLCFRPNKISRKILSPLEMSLKSHFGL 120
D+ G RP R + P + R L +E LK FGL
Sbjct: 100 DLLMGGRPERTSYPPKYLCRPSLEMIEDKLKKWFGL 135
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +1
Query: 214 PPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQP 393
PP P SVP P GP + + + + +F ++P PP+ + + +
Sbjct: 282 PPSPRPTSVPPPIPSPGPSEDVNMDELIESFSDSVIFNNSMSPPPPLPPLRESSLETLEV 341
Query: 394 GGIKPDTVC-FHCAPTPGP 447
P T +PTP P
Sbjct: 342 TPEDPVTESKVEASPTPLP 360
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +1
Query: 214 PPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQP 393
PP P SVP P GP + + + + +F ++P PP+ + + +
Sbjct: 282 PPSPRPTSVPPPIPSPGPSEDVNMDELIESFSDSVIFNNSMSPPPPLPPLRESSLETLEV 341
Query: 394 GGIKPDTVC-FHCAPTPGP 447
P T +PTP P
Sbjct: 342 TPEDPVTESKVEASPTPLP 360
>AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical
protein Y37A1B.2b protein.
Length = 592
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = +1
Query: 226 SPRSVPTPEIPRGPDNQYS-------KQYYYKRSAIN-SVFPPIVAPVAEGPP 360
SP + P + D Q+S K + K AI+ SV PP + P + GPP
Sbjct: 54 SPHKMKPPILMEEEDEQHSTGKHSSRKSSFKKSGAISKSVLPPPLPPTSSGPP 106
>AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H
exchanger isoform 7 protein.
Length = 783
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 309 CASFIIILLGILVIRATRYFW 247
C S I I+LG++++ +FW
Sbjct: 399 CESLIFIILGVMLVNEREWFW 419
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,183,868
Number of Sequences: 27780
Number of extensions: 370767
Number of successful extensions: 1129
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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