Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4n10
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   1.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.3  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   3.0  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   3.9  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   5.2  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   6.9  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   6.9  

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 173 VVTQIAYITEFTLKCDNTLPENYGLYAEVDGKSL 274
           VV  + Y+TEF+     T P ++GL   +DG SL
Sbjct: 369 VVFDLKYVTEFS-----TSPNDFGLIPVIDGSSL 397


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +2

Query: 299  KYQISWTEEPAKARSGVHQINILDEEGWASLRRARRADPAASVAPLLAIQLSHPGSYSGP 478
            +Y +   E P    + V ++N  D+    SL  A    P    APL+    + P +YS  
Sbjct: 1296 RYGLKLVEAPIHEIAAVGELNPFDQVSIISL--ALDPPPIPERAPLV----NDPVNYSKN 1349

Query: 479  WVNSEILATFISIL 520
            W N +IL  F  IL
Sbjct: 1350 WWNVKILEHFDFIL 1363


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 104 SICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPENYGLY 250
           ++C  SCQN + +   F  +D  +  +      F L+ D  LP++  +Y
Sbjct: 163 NVCGPSCQNQRFQRHEFAKVDVFLTEK----KGFGLRADANLPKDTFVY 207


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 499 QYLGVHPWPGVAARMTKLYGE 437
           ++   HPWPG   R T+ Y E
Sbjct: 278 KFFAQHPWPGTRHRETREYTE 298


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 74  IYIITIALIGSICAESCQNPKVEASYFTSLDATVV 178
           IY++TIALI  + ++S +N         +LD +VV
Sbjct: 172 IYVLTIALINYLISKSLKNSIFNPLLTWTLDISVV 206


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
 Frame = +2

Query: 272 LTAARIGENKYQISWTEEPAK--------ARSG-VHQINILDEEGWASLRRARRADPAAS 424
           + A  +G N +++ + E+ +K        ARSG  +    L +E   + +RAR+ DP  S
Sbjct: 283 MKAMELGHNSWRLEYGEDRSKRMRNKSPMARSGRFNDAESLGQEDKPNFKRARKIDP-RS 341

Query: 425 VAPLLAI 445
           V P  A+
Sbjct: 342 VRPGAAL 348


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 23/110 (20%), Positives = 49/110 (44%)
 Frame = +2

Query: 17  FKIRFTFKVTNNKMVTKSFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYI 196
           F+  +TF   + KM+     +    + + +I  +        + Y TS+ +T + Q ++ 
Sbjct: 392 FRNAYTFYHQSQKMIAIGQAFYNATSNLSAIVDQHIPGALTCSQYPTSVASTQLVQTSHF 451

Query: 197 TEFTLKCDNTLPENYGLYAEVDGKSLTAARIGENKYQISWTEEPAKARSG 346
           T  +L   N + E+  +Y+     S+ ++ I    + IS   + A A +G
Sbjct: 452 TSTSLSAVN-ISESV-VYSYTSSSSMPSSAI--PSFNISLISQNAVANAG 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,059
Number of Sequences: 5004
Number of extensions: 41802
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)