Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4n08
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 34 0.023
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 31 0.12
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 31 0.21
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.1
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 1.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 2.6
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 4.5
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 4.5
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 4.5
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 6.0
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 6.0
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 6.0
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 33.9 bits (74), Expect = 0.023
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 344 EPIQPELDRSTTE--SMPQHTESFVIEQMVTVNSEEEMELKNEQTALESD-NKENSLDCE 514
EP TT S+ Q + M V E E+E KN T E+D N+++ +C+
Sbjct: 303 EPFDTNFPALTTRPLSICQRATDIIERSMNYVFGESELEEKNASTKTENDSNEDDKEECQ 362
Query: 515 -PVPKSAPNSRPQTPK 559
S P S TPK
Sbjct: 363 SSSTSSVPESTASTPK 378
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 281 EHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMP--QHTESFVIEQMVTVNSEEEME 454
E + K+E + + + + YI ++ LDR+ T +P + ++ E+ V+ E+E
Sbjct: 334 EVLREKVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELE 393
Query: 455 LKNEQTAL--ESDNKENS 502
EQ + E DN+ S
Sbjct: 394 HTIEQLTINNERDNERMS 411
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 30.7 bits (66), Expect = 0.21
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 296 KIESISDMKVQNECYIEPIQPELDRSTTESMPQH-TESFVIEQMVTVNSEEEMELKNEQT 472
K++++S + Y+ PE TE M Q T++ + Q +++SE+E KN
Sbjct: 238 KLDTLSKSIINIFDYLLSHLPESWSIITEHMAQELTKATYVSQSSSISSEDEEIAKNADV 297
Query: 473 ALESDNKENSLD 508
E DN D
Sbjct: 298 PAEVDNNSTKAD 309
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +2
Query: 278 TEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQM----VTVNSEE 445
T VT + +++ +++ E S+TE+ T S E VTVNS E
Sbjct: 987 TSAVTELPDPNHQLEMSTTTHVQHPNSETIPSSTENQYFDTTSGAFEANSNTEVTVNSNE 1046
Query: 446 EMELKNEQTALESDNKENSLDCEPV 520
+ + TA ESDN ++ L + V
Sbjct: 1047 VSQPFDFDTANESDNDDDELPVQQV 1071
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 272 VITEHVTHKIESISDMKV---QNECYIEPIQPELDRSTTESMPQHT 400
V TE+ + +++ SD K Q +P QP+ ++STT HT
Sbjct: 127 VKTENFANDLDTTSDSKPVVHQTRATRKPAQPKAEKSTTSKSKSHT 172
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 634 RLLEEQWCR--WTT*WSWRLWPTAL*SFRSLWAAIWRRFWY 518
RL E QW R + T + R W + +F +W + FWY
Sbjct: 489 RLPEVQWNRAFYKTYYESRSWFHLITNFNRIWVIHFGMFWY 529
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 272 LFQSSKAPATEEHDLVIVFGST 207
+ + SK P + HD+V+V GST
Sbjct: 322 VLKDSKVPKADVHDIVLVGGST 343
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 371 STTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAP 535
STTE + + +F+IE + V + E+ K + L +D S+D EP P P
Sbjct: 1049 STTELIGKKERTFIIEHYLIVLNTLELLPKEDTWILVTD---MSVDKEPDPNFLP 1100
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 336 VTLNRYSQN*TGQLRNRCHSILSHLLLNKWLR*ILKK 446
++LN S + L H IL HL LNK ++K+
Sbjct: 1 MSLNNLSNSYNQYLAQESHQILRHLFLNKQYSPLVKR 37
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 401 ESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPV-PKSAPNSRP 547
E F +Q +NS E ++ +Q +S K NS+ + V P+ P+ P
Sbjct: 167 EVFDRKQSAEINSPIEKDVNPQQNISDSSIKNNSIHSDEVNPEVRPDLTP 216
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 368 RSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAP 535
R + S + F T+ +E + E ++ QT K NSL+C+ + P
Sbjct: 159 RESCLSTETSSSKFSAVTAATITNETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGP 214
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 434 NSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQT 553
+SEEE EL + ALE N + ++ + P SR T
Sbjct: 33 DSEEESELDTNKQALEHINAQKNITHNENKSAEPLSRQST 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,240
Number of Sequences: 5004
Number of extensions: 54910
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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