Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4n07
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    30   0.29 
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    27   2.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.2  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   8.2  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.2  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    25   8.2  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 381 RPRSHLCVGEDAHLKHGAGHVGSDGPPLGLLYEILPILSGHV 506
           + +S+ C   ++H K+  GH G   PP  LL  I+  +  HV
Sbjct: 691 KSKSYACCTSESH-KYVQGHCGGQAPPFPLLKVIIDSIPVHV 731


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 485 KNLIEQTQRWTIRANMPSTMLEM 417
           K LIEQT    +R+N+ ST+LE+
Sbjct: 429 KELIEQTYPEILRSNLSSTVLEL 451


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 537 NDNSGSTRQSAFGYCGPRSFDEVPEE-PAASDP 632
           NDN   TR+S++      +F++ PEE P AS+P
Sbjct: 252 NDNDSQTRRSSWSSIA-SAFNDFPEEFPNASNP 283


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 519 SKHAARNDNSGSTRQSAFGYCGPRSFDEVPEEPAASDPYHDLLVPVALLC*LRQEAL 689
           +KHAA+N  S   R+++       S D V    A SD    L +   LL   ++E L
Sbjct: 192 TKHAAKNSPSKKKRKTSVATAEDASTDSVSSSIAISDASLSLSLMKDLLSLQKREDL 248


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
 Frame = +1

Query: 223 SAHCDICDSHLETIAKWLSCNGDVWGVGPTVVFASAAALFLYNELEATIFTAGDHAHISA 402
           S   +I  +H + + K L     ++ +  T +FAS    F ++ L  T         +  
Sbjct: 72  STEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGI 131

Query: 403 LEKTLISSMVLGMLALMVHLWV-CSMRFFQYYLDTLIRDSPSMLLEMTTA 549
            +KT I  + + +L  ++ L    S+ +  Y L    R++    L MT A
Sbjct: 132 ADKT-IDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIA 180


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +3

Query: 132 VRNGDYENSTF 164
           V+NGDYENS+F
Sbjct: 667 VKNGDYENSSF 677


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 21/74 (28%), Positives = 31/74 (41%)
 Frame = +1

Query: 211 SVSFSAHCDICDSHLETIAKWLSCNGDVWGVGPTVVFASAAALFLYNELEATIFTAGDHA 390
           S+ +SA       H     +W+  +GDV  VG T   A+A    ++ EL     T     
Sbjct: 33  SMKWSAVKYYSTKHFTKEHEWVKVDGDVGTVGITSYAANALGEVVFVELPEPETTVSVGD 92

Query: 391 HISALEKTLISSMV 432
            I A+E    +S V
Sbjct: 93  GIGAVESVKSASDV 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,705
Number of Sequences: 5004
Number of extensions: 59975
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)