Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4m24
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    28   5.7  
U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.        27   7.5  
D49525-2|BAA08471.1|  567|Caenorhabditis elegans TPA-1B protein.       27   9.9  
D49525-1|BAA08470.1|  704|Caenorhabditis elegans TPA-1A protein.       27   9.9  
D14815-1|BAA03556.1|  557|Caenorhabditis elegans TPA-1 protein.        27   9.9  
AF078781-3|AAC26917.1|  567|Caenorhabditis elegans Tpa (tetradec...    27   9.9  
AF078781-2|AAC26916.1|  704|Caenorhabditis elegans Tpa (tetradec...    27   9.9  

>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 152 AKLPASTTVHFQTRSHDSDRA*YHF-VKRQEKLSDSLELAITQRVRVR 292
           AKLP +T  HF  R+H+S++  +     R+ K+    E+   + + +R
Sbjct: 539 AKLPRATFQHFTQRAHESNKNHFRLDAPRKSKVKSHREMRDDEGLLIR 586


>U52517-1|AAA97927.1|  846|Caenorhabditis elegans hum-3 protein.
          Length = 846

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 152 AKLPASTTVHFQTRSHDSDRA*YHFVKRQEKLSDSLELAITQRVRVR 292
           AKLP +T  HF  R+H+S++  + ++  Q +     E+   + + +R
Sbjct: 337 AKLPRATFQHFTQRAHESNKNHFDWMHAQVESQGYREMRDDEGLLIR 383


>D49525-2|BAA08471.1|  567|Caenorhabditis elegans TPA-1B protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 148 HCQATGVDYRTFSNEE--PRFRPSIIS 222
           HC   GVD++ F N +  P F+P+I S
Sbjct: 494 HCFFRGVDWKRFENRQVPPPFKPNIKS 520


>D49525-1|BAA08470.1|  704|Caenorhabditis elegans TPA-1A protein.
          Length = 704

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 148 HCQATGVDYRTFSNEE--PRFRPSIIS 222
           HC   GVD++ F N +  P F+P+I S
Sbjct: 631 HCFFRGVDWKRFENRQVPPPFKPNIKS 657


>D14815-1|BAA03556.1|  557|Caenorhabditis elegans TPA-1 protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 148 HCQATGVDYRTFSNEE--PRFRPSIIS 222
           HC   GVD++ F N +  P F+P+I S
Sbjct: 484 HCFFRGVDWKRFENRQVPPPFKPNIKS 510


>AF078781-3|AAC26917.1|  567|Caenorhabditis elegans Tpa
           (tetradecanoyl phorbol acetate)resistant protein 1,
           isoform b protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 148 HCQATGVDYRTFSNEE--PRFRPSIIS 222
           HC   GVD++ F N +  P F+P+I S
Sbjct: 494 HCFFRGVDWKRFENRQVPPPFKPNIKS 520


>AF078781-2|AAC26916.1|  704|Caenorhabditis elegans Tpa
           (tetradecanoyl phorbol acetate)resistant protein 1,
           isoform a protein.
          Length = 704

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 148 HCQATGVDYRTFSNEE--PRFRPSIIS 222
           HC   GVD++ F N +  P F+P+I S
Sbjct: 631 HCFFRGVDWKRFENRQVPPPFKPNIKS 657


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,544
Number of Sequences: 27780
Number of extensions: 222415
Number of successful extensions: 355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)