Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4m22
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047658-6|AAY86253.1| 295|Caenorhabditis elegans Hypothetical ... 31 0.88
Z75714-7|CAB00064.2| 270|Caenorhabditis elegans Hypothetical pr... 28 6.2
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 28 6.2
Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical pr... 28 8.2
U67954-6|AAV28344.1| 452|Caenorhabditis elegans Wrapper/rega-1/... 28 8.2
U67954-5|AAM54179.1| 444|Caenorhabditis elegans Wrapper/rega-1/... 28 8.2
U67954-3|AAM54178.1| 436|Caenorhabditis elegans Wrapper/rega-1/... 28 8.2
AF456363-1|AAL60234.1| 443|Caenorhabditis elegans immunoglobuli... 28 8.2
AF456362-1|AAL60233.1| 435|Caenorhabditis elegans immunoglobuli... 28 8.2
AF077540-2|AAC26311.2| 362|Caenorhabditis elegans Hypothetical ... 28 8.2
>AF047658-6|AAY86253.1| 295|Caenorhabditis elegans Hypothetical
protein K03H6.6 protein.
Length = 295
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 154 GYFLFKDSLELTFFNIAFNKVILYIICLNYCTLNFLLKKT 35
G K+ L TFF +AF + IL IC+ +C FL+ T
Sbjct: 230 GTMFEKNPLAFTFFFLAFRRKILQTICI-FCACYFLIPFT 268
>Z75714-7|CAB00064.2| 270|Caenorhabditis elegans Hypothetical
protein ZC434.4 protein.
Length = 270
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 447 FKEIRKDNLQLYKRIVKAKARVQTTAE-LIEDWKTKHREIEKDTTMLYPYGPLAEDHAYI 623
F + KD+ LY+++ ++ ++Q A+ +E + T+ E K+ Y ++ +I
Sbjct: 139 FPSVLKDSTTLYRKLFPSEEQIQEMADTYVERYDTEQTEARKEAKRKYSE---PDEDGWI 195
Query: 624 STQRTEATKVYITLRVREGAVLGVL 698
+ + + + L+ + ++G L
Sbjct: 196 TVTKAKKAAKSVKLKKEDVPLIGGL 220
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -3
Query: 716 REQNHREHSQHRSLSHPQRYVHLGSFSSLCRNVSVVLRKGPIRI 585
++Q+ EH + SH + + + + S+LC S V P ++
Sbjct: 409 KQQSREEHDKMSDKSHEEEHTSVSTDSALCSETSEVRGPSPYKL 452
>Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical
protein T04A11.12 protein.
Length = 327
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = -1
Query: 418 GLTGNFNQLQSTLPRKKCCLFILNNRLMLVA*ICRFCCVHCSKLRYIGAELNLGGDVSTT 239
GL NF+ L +TL CC I+ N ++L+ I C ++ ++ + ++T
Sbjct: 203 GLVNNFSLLFNTLFWMTCC--IITNFILLLLLIKSRCLLNAQTRSMHSYKVEVSLSLTTF 260
Query: 238 AVMLEYLCVCFRFLC 194
+++ YL +C
Sbjct: 261 SMIFSYLSNAMIVIC 275
>U67954-6|AAV28344.1| 452|Caenorhabditis elegans
Wrapper/rega-1/klingon homologprotein 1, isoform e
protein.
Length = 452
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 256 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 77
GD+S A +Y C L + ++ +SG L D ELT+ AF+K++ Y +
Sbjct: 292 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 350
Query: 76 C 74
C
Sbjct: 351 C 351
>U67954-5|AAM54179.1| 444|Caenorhabditis elegans
Wrapper/rega-1/klingon homologprotein 1, isoform b
protein.
Length = 444
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 256 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 77
GD+S A +Y C L + ++ +SG L D ELT+ AF+K++ Y +
Sbjct: 284 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 342
Query: 76 C 74
C
Sbjct: 343 C 343
>U67954-3|AAM54178.1| 436|Caenorhabditis elegans
Wrapper/rega-1/klingon homologprotein 1, isoform a
protein.
Length = 436
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 256 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 77
GD+S A +Y C L + ++ +SG L D ELT+ AF+K++ Y +
Sbjct: 276 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 334
Query: 76 C 74
C
Sbjct: 335 C 335
>AF456363-1|AAL60234.1| 443|Caenorhabditis elegans immunoglobulin
domain-containingprotein WRK-1B protein.
Length = 443
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 256 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 77
GD+S A +Y C L + ++ +SG L D ELT+ AF+K++ Y +
Sbjct: 283 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 341
Query: 76 C 74
C
Sbjct: 342 C 342
>AF456362-1|AAL60233.1| 435|Caenorhabditis elegans immunoglobulin
domain-containingprotein WRK-1A protein.
Length = 435
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 256 GDVSTTAVMLEYLCVCFRFLCFMVLMISISGGGDGYFLFKDSLELTFFNIAFNKVILYII 77
GD+S A +Y C L + ++ +SG L D ELT+ AF+K++ Y +
Sbjct: 275 GDISEEAFG-DYACRISNKLGSVTAVVHVSGRPGPPQLSFDESELTWTVRAFDKILEYQL 333
Query: 76 C 74
C
Sbjct: 334 C 334
>AF077540-2|AAC26311.2| 362|Caenorhabditis elegans Hypothetical
protein T07H3.3a protein.
Length = 362
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +3
Query: 408 PVRPKRHDARSHYFKEIRKDNLQLYKRIVKAKARVQ-TTAELIEDWKTKHREIEKDTTML 584
P+R +R AR YF I+K+ Q + + + +V+ + A+L E K+ E D L
Sbjct: 275 PIRVERSRAREDYFDFIKKEVDQEMETVKEMARKVKLSNAKLEESLKSHSNADEAD---L 331
Query: 585 YPYGPLAEDHAYISTQRTEATKVYITLRV 671
+ + D A ++ + +T R+
Sbjct: 332 MKFLEIRHDKAVLTDATVDVVLQVVTARL 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,131,579
Number of Sequences: 27780
Number of extensions: 300362
Number of successful extensions: 882
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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