Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4m17
         (164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    43   5e-06
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    36   5e-04
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    29   0.11 
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    27   0.44 

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 43.2 bits (97), Expect = 5e-06
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +3

Query: 93  MREIXHIQAGXCGNQIGXXFWEII 164
           MREI HIQAG CGNQ+G  FW  I
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTI 24


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 36.3 bits (80), Expect = 5e-04
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 96  REIXHIQAGXCGNQIGXXFWE 158
           REI  +QAG CGNQIG  FW+
Sbjct: 3   REIITLQAGQCGNQIGSQFWQ 23


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 93  MREIXHIQAGXCGNQIGXXFWEI 161
           MREI  I  G  G QIG   WE+
Sbjct: 1   MREIISIHVGQAGTQIGNACWEL 23


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 93  MREIXHIQAGXCGNQIGXXFWEI 161
           MRE+  +  G  G QIG   WE+
Sbjct: 1   MREVISVHVGQAGVQIGNACWEL 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,296
Number of Sequences: 5004
Number of extensions: 4718
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)