Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4m17
(164 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 46 5e-06
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 46 5e-06
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 46 5e-06
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 46 5e-06
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 45 7e-06
03_01_0034 + 318432-318825,318902-319851 45 7e-06
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 45 7e-06
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 45 7e-06
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 35 0.008
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 27 2.7
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 27 2.7
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 45.6 bits (103), Expect = 5e-06
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQ G CGNQIG FWE+I
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVI 24
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 45.6 bits (103), Expect = 5e-06
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQ G CGNQIG FWE+I
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVI 24
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 45.6 bits (103), Expect = 5e-06
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQ G CGNQIG FWE+I
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVI 24
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 45.6 bits (103), Expect = 5e-06
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQ G CGNQIG FWE+I
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVI 24
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 45.2 bits (102), Expect = 7e-06
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQ G CGNQIG FWE++
Sbjct: 181 MREILHIQGGQCGNQIGSKFWEVV 204
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 45.2 bits (102), Expect = 7e-06
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQ G CGNQIG FWE++
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVV 24
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 45.2 bits (102), Expect = 7e-06
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQ G CGNQIG FWE++
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVV 24
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 45.2 bits (102), Expect = 7e-06
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQ G CGNQIG FWE++
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVV 24
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 35.1 bits (77), Expect = 0.008
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 96 REIXHIQAGXCGNQIGXXFWE 158
REI IQ G CGNQIG FW+
Sbjct: 3 REIITIQVGQCGNQIGMEFWK 23
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MREI I G G Q+G WE+
Sbjct: 1 MREIISIHIGQAGIQVGNACWEL 23
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MREI I G G Q+G WE+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWEL 23
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,518
Number of Sequences: 37544
Number of extensions: 29070
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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