Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4m17
(164 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 47 2e-06
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 47 2e-06
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 47 2e-06
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 47 2e-06
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 47 2e-06
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 47 2e-06
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 40 3e-04
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 40 3e-04
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 27 1.8
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 27 1.8
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 27 1.8
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 27 1.8
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 27 1.8
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 27 2.4
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 27 2.4
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 27 2.4
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 25 7.2
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 25 7.2
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 25 9.5
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 25 9.5
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQAG CGNQIG FWE+I
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVI 24
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQAG CGNQIG FWE+I
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVI 24
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI HIQAG CGNQIG FWE+I
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVI 24
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI H+QAG CGNQIG FWE+I
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVI 24
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI H+QAG CGNQIG FWE+I
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVI 24
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
MREI H+QAG CGNQIG FWE+I
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVI 24
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 39.5 bits (88), Expect = 3e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
M+EI ++Q G CGNQIG FWE I
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYI 24
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 39.5 bits (88), Expect = 3e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEII 164
M+EI ++Q G CGNQIG FWE I
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYI 24
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHVGQAGVQIGNACWEL 23
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHVGQAGVQIGNACWEL 23
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHVGQAGVQIGNACWEL 23
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MREI I G G QIG WE+
Sbjct: 1 MREIVSIHIGQAGVQIGNACWEL 23
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHVGQAGVQIGNACWEL 23
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHVGQAGVQIGNACWEL 23
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHVGQAGVQIGNACWEL 23
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHVGQAGVQIGNACWEL 23
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHIGQAGVQIGNACWEL 23
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHIGQAGVQIGNACWEL 23
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 93 MREIXHIQAGXCGNQIGXXFWEI 161
MRE+ I G G QIG WE+
Sbjct: 1 MREVISIHIGQAGVQIGNACWEL 23
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 96 REIXHIQAGXCGNQIGXXFWEI 161
RE+ I G G QIG WE+
Sbjct: 8 REVISIHVGQAGVQIGNACWEL 29
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 111 IQAGXCGNQIGXXFWE 158
+ G CGNQ+ FW+
Sbjct: 10 VHVGQCGNQLAQAFWK 25
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 111 IQAGXCGNQIGXXFWE 158
+ G CGNQ+ FW+
Sbjct: 10 VHVGQCGNQLAQAFWK 25
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 87 NIMREIXHIQAGXCGNQIGXXFWEI 161
N RE+ I G G Q+G WE+
Sbjct: 4 NRSREVISIHVGQAGVQMGNACWEL 28
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 96 REIXHIQAGXCGNQIGXXFWEI 161
RE+ I G G QIG WE+
Sbjct: 1 REVISIHIGQAGVQIGNACWEL 22
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,123
Number of Sequences: 27780
Number of extensions: 24715
Number of successful extensions: 49
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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