Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4m13
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006617-6|AAF39769.1|  303|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    29   2.6  
AC199170-7|ABO33265.1|   69|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical
           protein T01C3.8 protein.
          Length = 541

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 323 RSQFPRFPTVP*PGDSTKQLVKPLLDKSQTTNTTRTRNFMSKYST 457
           R  FPR   +   G  +K +++ LL+K +++N+TR    ++   T
Sbjct: 131 RKPFPRCIIITTDGKRSKSVMRGLLNKRRSSNSTRPNTHITNLDT 175


>AC006617-6|AAF39769.1|  303|Caenorhabditis elegans Hypothetical
           protein C39B5.4 protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 193 TGGRPYVVLYNNLFVVDLPRKTFRFHL 113
           TGG P  + YNN F V+L   TF  +L
Sbjct: 269 TGGYPCKIEYNNRFAVELEESTFEPNL 295


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
            neurexin-like protein 1 protein.
          Length = 1655

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 157  DYYRGLRKAYHPLTYFSDPEY 219
            DY RG    Y P+TYF++P +
Sbjct: 1374 DYQRGSSLTYKPITYFANPTH 1394


>AC199170-7|ABO33265.1|   69|Caenorhabditis elegans Hypothetical
           protein T08D2.6 protein.
          Length = 69

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 88  ILFVDNERQDEIETFYEASQRQRDYYRGLRKAYHPLTYF 204
           +L V+ E  D+I    E      D Y  +R   HPL YF
Sbjct: 17  LLEVNEEDSDQIPLLEELDIDLTDIYYKIRCVLHPLPYF 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,332
Number of Sequences: 27780
Number of extensions: 201671
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)