Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4m11
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509... 33 0.15
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 0.79
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 31 0.79
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 30 1.4
09_04_0549 + 18478475-18478664,18479381-18480648 29 1.8
09_04_0547 + 18467016-18467205,18467922-18469189 29 1.8
11_01_0260 - 1985258-1985794,1986874-1986990 29 2.4
07_01_0084 + 657846-658538,660652-661920 29 3.2
09_06_0019 + 20258844-20258988,20259870-20259974,20261027-202610... 28 4.2
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 28 5.6
02_04_0521 - 23631951-23633810 28 5.6
05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332 27 7.4
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 27 7.4
02_04_0633 - 24616563-24617279 27 7.4
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 27 7.4
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 7.4
11_04_0083 + 13338340-13338520,13338865-13338881 27 9.8
07_03_0072 - 13051145-13052362 27 9.8
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 27 9.8
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 27 9.8
>03_05_0382 +
23649597-23649645,23649675-23649735,23650784-23650937,
23651019-23651149,23651239-23651315,23651439-23651477,
23651976-23652067,23652140-23652277,23652385-23652549
Length = 301
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 306 IGSGNYDTNYNMFVPGTIFRIVFEIKDT 389
IGS NYDT+Y + VP RI+F++ T
Sbjct: 237 IGSSNYDTSYKIRVPSWTDRILFKVDHT 264
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 30.7 bits (66), Expect = 0.79
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 71 GRLRGY*--T*NAGFHRQHTGITKSWRQNRDRWQNQGECKKDVREPLRSRRRGAEGCGSP 244
GR RGY + + + ++SW ++R R ++ + R P RSR R + P
Sbjct: 1223 GRSRGYDRRSGSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRSRSYDQGAGP 1282
Query: 245 LRREVP 262
RR P
Sbjct: 1283 ARRPRP 1288
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 30.7 bits (66), Expect = 0.79
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 108 FTANIPGLLKVGDKIEIGGKIKENARKMSVNLCAQE--GEEPRDVVLHFDVRFHRDNI 275
FT +IP L VG + I G + ++L E G + +VLH+DVR D +
Sbjct: 187 FTIDIPCGLIVGSSVTIIGTPGSLSGNFRIDLVGTELPGGSGKPIVLHYDVRLTSDEL 244
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 260 PPGQHHIAVQEERHLDRKRKLRHQLQH 340
PP QH Q+++HLD + L+HQ QH
Sbjct: 145 PPPQHQ---QQQQHLDAMQDLQHQHQH 168
>09_04_0549 + 18478475-18478664,18479381-18480648
Length = 485
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 276 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 413
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>09_04_0547 + 18467016-18467205,18467922-18469189
Length = 485
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 276 ISLSRKNGIWIGSGNYDTNYNMFVPGTIFRIVFEIKDTDVITIYCQ 413
+SL + GI +G+GNY + + P + ++F+ +D+ + C+
Sbjct: 134 VSLPAQRGISLGTGNYVVSVGLGTPAKQYAVIFD-TGSDLSWVQCK 178
>11_01_0260 - 1985258-1985794,1986874-1986990
Length = 217
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 125 GITKSWRQNRDRWQNQGECKKDVREPLRSRRRGAEGCG 238
G+ K RQN++R + +G C+ ++ P+ + CG
Sbjct: 153 GLWKVGRQNKERGRGRGRCRGSLQPPVHVVGQQQSSCG 190
>07_01_0084 + 657846-658538,660652-661920
Length = 653
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 347 SWHDISDSLRNQGHGRHHDILPGEVSFELPPEDTTQHGQIHCGLGGRGEDLALLF 511
S+H I HGRH GEV+F+ P ++ Q+H +++ ++F
Sbjct: 110 SYHHIDHDGNPLPHGRHRVAASGEVAFDSP----SRPDQVHLSFADGVDEMRVMF 160
>09_06_0019 +
20258844-20258988,20259870-20259974,20261027-20261097,
20261658-20261714,20262661-20262849,20263096-20263119
Length = 196
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 122 TGITKSWRQNRDRWQNQGECKKDVREPLRSRRRGA--EGCGSPLRREVPPGQHHIAVQEE 295
TG++K+ QN+ W+ + +K V L + G + G P RR PG A ++
Sbjct: 100 TGLSKALYQNKTVWKAI-DYEKLVNSWLYNELPGCTDDVAGRPSRRFRCPGDFAFATDQK 158
Query: 296 RHLDRK 313
+HL R+
Sbjct: 159 QHLPRE 164
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 162 GKIKENARKMSVNLCAQEGEEPRDVVLHFDVRFHRDNIISLSRKNGIWIGSGNYDTN 332
G++ +R+ + C++ G PR D+ H ++ SRK + GS +N
Sbjct: 76 GRMAYGSRRNAAGTCSETGNRPRRETAGQDLLDHLKERVNSSRKRSLSGGSSPSSSN 132
>02_04_0521 - 23631951-23633810
Length = 619
Score = 27.9 bits (59), Expect = 5.6
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +2
Query: 221 GAEGCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHVCSWHDISDSLRNQGHGRHH 400
G G GSP +PP Q ++V + R+ +L + LQ + D+S RN+ G
Sbjct: 402 GGSGQGSPSEAVLPP-QLFVSVSTDM-AGRQLELGYDLQ-AATGIDLS---RNELRGEIP 455
Query: 401 DILPGEVSFE-LPPEDTTQHGQIHCGLGGRGEDLALLF*FREQNG 532
D L E L GQI G+GG G+ L F E +G
Sbjct: 456 DGLVAMKGLEYLNLSCNYLDGQIPSGIGGMGKLRTLDFSHNELSG 500
>05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332
Length = 225
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +2
Query: 212 RRRGAEGCGSPL---RREVPPGQHHIAVQEERHLDRKRKLRHQLQHVCSWHDISDSLRNQ 382
RR G G G L R E P G+ + V ++ K + L HV S D L
Sbjct: 54 RRGGGGGGGGGLCRSREEAPAGRKRVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVL 113
Query: 383 GHG 391
HG
Sbjct: 114 PHG 116
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 182 KKDVREPLRSRRRGAEGCGSPLRREVPPGQHHIAVQEERHLDRK 313
K D E LR + R + Q HIAV EE +LD+K
Sbjct: 789 KMDAEESLREEKDKLCSIIDERCRNIDELQQHIAVLEEENLDKK 832
>02_04_0633 - 24616563-24617279
Length = 238
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +1
Query: 424 IRTSSRRYHSTWPNTLWPGR----TWRGSRIVI 510
+R SS+ + +PN +WPG T+RG ++ I
Sbjct: 90 VRLSSQNQVTNYPNCIWPGTTVEVTYRGVQLAI 122
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 230 GCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHV 343
G +P P G HH EER D KR+ + ++ ++
Sbjct: 180 GLDTPQASRRPDGVHHARTDEERSPDSKRRKKVKITNL 217
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 230 GCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHV 343
G +P P G HH EER D KR+ + ++ ++
Sbjct: 180 GLDTPQASRRPDGVHHARTDEERSPDSKRRKKVKITNL 217
>11_04_0083 + 13338340-13338520,13338865-13338881
Length = 65
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 155 DRWQNQGECKKDVREPLRSRRRGAEGCGS 241
+ W+ +G+ ++ E R RG GCG+
Sbjct: 19 EEWEEEGDRERKEWEEAGDRERGRSGCGA 47
>07_03_0072 - 13051145-13052362
Length = 405
Score = 27.1 bits (57), Expect = 9.8
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = +2
Query: 137 SWRQNRDRWQNQGECKKDVREPLRSRRRGAE-GCGSPLRREVPPGQHHIAVQEERHLDRK 313
+W+ R W++Q ++ +R PL RR P + G H + R L++
Sbjct: 218 AWQCRRGYWRSQRRQRRRLRVPLPWRRSTVRASVRFPGDAIMRIGFHSGRRKFRRRLEQS 277
Query: 314 RKLRHQLQHVCSWHDI--SDSLRNQGHGRHHDILP 412
R WHD+ + +LR G R D LP
Sbjct: 278 HGKRSGFFGRQVWHDLLANRALRADGPARALDWLP 312
>07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 275 HIAVQEERHLDRKRKLRHQLQHVCSWHDISDSLRNQGH 388
HI+ +E L+ R R + C WHD+ D RN H
Sbjct: 1381 HIS-KEMNELNLIRCQRIPKRPGCDWHDLPDEKRNVNH 1417
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 308 RKRKLRHQLQHVCSWHDISDSLRNQG 385
+++ LR LQH+CS +I +L N G
Sbjct: 211 KRKMLRKSLQHLCSSSEIEAALANIG 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,338,701
Number of Sequences: 37544
Number of extensions: 372894
Number of successful extensions: 1187
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -