Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4m11
         (545 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    27   0.53 
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   2.8  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   5.0  
CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein ...    23   6.6  
AY496420-1|AAS80137.1|  447|Anopheles gambiae bacteria responsiv...    23   8.7  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        23   8.7  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 26.6 bits (56), Expect = 0.53
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +2

Query: 215 RRGAEGCGSPLRREVPPGQHHIAVQEERHLDRKRKLRHQLQHVC------SWHDISDSLR 376
           RRG     S ++R V  G+   + +   H D KR L      +C      SW  I+D+LR
Sbjct: 545 RRG-RSTFSAIQRVVDAGRRAKSFRRTNHRD-KRCLMVVALDICNAFNTASWQSIADALR 602

Query: 377 NQG 385
           N+G
Sbjct: 603 NKG 605


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
            protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 369  LSEISCQEQTCCSWCRNFRFRSKCRSSWTAI*CCPGGTSRRSGEPHPSAPRLLERKGSRT 190
            LS  S ++ +   W   +   +K R++   I      TSR+ GE +    + L   G   
Sbjct: 835  LSRSSAKQLSMRKWQSEWDCSTKGRTTHALIPNIAAWTSRKHGEVNFYMTQFLSDHGCFR 894

Query: 189  SFLH 178
            S+LH
Sbjct: 895  SYLH 898


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 267 PGGTSRRSGEPHPSAPR 217
           PGG   R G P P  PR
Sbjct: 403 PGGGEGRPGAPGPKGPR 419


>CR954257-5|CAJ14156.1|  227|Anopheles gambiae predicted protein
           protein.
          Length = 227

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 415 PWQYIVMTSVSLISKTIRNIVPGTN 341
           P +Y+ +   S+I K  RN+  G N
Sbjct: 108 PGEYVDLARPSMIVKCTRNVCTGRN 132


>AY496420-1|AAS80137.1|  447|Anopheles gambiae bacteria responsive
           protein 1 protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 261 GTSRRSGEPHPSAP--RLLERKGSRTSFLHS 175
           G  R  GE  P      LLE  GSRT+F++S
Sbjct: 115 GNYRDLGEEKPFEKYLTLLESGGSRTAFVNS 145


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 421 FIRTSSRRYHSTWPNTL 471
           ++R  S++  STW NT+
Sbjct: 111 YLRNGSKKMTSTWENTV 127


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,917
Number of Sequences: 2352
Number of extensions: 13757
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)