Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4m08
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1FKK2 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q2AHX3 Cluster: HDIG; n=3; Bacteria|Rep: HDIG - Halothe...    33   5.2  
UniRef50_A6LVD4 Cluster: Sigma54 specific transcriptional regula...    33   9.1  
UniRef50_Q3AF97 Cluster: Trigger factor; n=3; Peptococcaceae|Rep...    33   9.1  

>UniRef50_Q1FKK2 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 560

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +1

Query: 607 FHGKVGQNLEGIVSKTVDSFIRGLE 681
           F+  VG NLEGI SK +D FI GL+
Sbjct: 146 FNMSVGYNLEGIKSKKIDDFIEGLK 170


>UniRef50_Q2AHX3 Cluster: HDIG; n=3; Bacteria|Rep: HDIG -
           Halothermothrix orenii H 168
          Length = 514

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 19/49 (38%), Positives = 32/49 (65%)
 Frame = +3

Query: 240 VSNPVVTKVEDALDRVTELLVVKMIQLRDKQLPGELEYLQKELEKVKRK 386
           + + +V K E++LDR TE+L  K   LRDK+    L+ L+ E++++K K
Sbjct: 88  IEDRLVNK-EESLDRKTEILEKKEQSLRDKE--SNLDKLESEIKELKEK 133


>UniRef50_A6LVD4 Cluster: Sigma54 specific transcriptional
           regulator, Fis family; n=1; Clostridium beijerinckii
           NCIMB 8052|Rep: Sigma54 specific transcriptional
           regulator, Fis family - Clostridium beijerinckii NCIMB
           8052
          Length = 689

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = +3

Query: 159 IQTVRPVVSKLWYMTKTTIISTPVKPLVSNPVVTKVEDALDRVTELLVVKMIQLRDKQLP 338
           ++T   ++  + Y     II + V P+V +  +T V   +  VTE   V+ +  +  Q+ 
Sbjct: 286 LKTGESIIGAISYKENGVIIVSNVNPIVIDGEITGVVSIVKNVTE---VQKLSEKLTQVS 342

Query: 339 GELEYLQKELEKVKR 383
            + +YL++EL + K+
Sbjct: 343 AKADYLEEELMRTKK 357


>UniRef50_Q3AF97 Cluster: Trigger factor; n=3; Peptococcaceae|Rep:
           Trigger factor - Carboxydothermus hydrogenoformans
           (strain Z-2901 / DSM 6008)
          Length = 427

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 231 KPLVSNPVV-TKVEDALDRVTELLVVKM-IQLRDKQLPGELEYLQKELEKVKRKLKGE 398
           +PLV   VV  K E  L + T L V KM +++ D+++  ELEYLQ    K+     GE
Sbjct: 102 EPLVYKAVVDVKPEVELGQYTGLEVTKMPVEVTDEEVEKELEYLQNRYAKLITVEDGE 159


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,901,954
Number of Sequences: 1657284
Number of extensions: 10886776
Number of successful extensions: 29575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29559
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)