Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4m05
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   3.7  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   4.8  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   6.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   8.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 158 EVKSLLEGCDRLTGLNITSVGGTIVNDHNCDVL 256
           E   LL GC  L  L I S GG I +    DVL
Sbjct: 362 ECVRLLAGCRNLVSLKIESPGGIINDGSILDVL 394


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 210 VMFNPVNLSQPSSKLFTSVI 151
           ++ NP+NLSQP +++   V+
Sbjct: 130 ILENPINLSQPKTRILLEVL 149


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 293 QYFMADSVNIIYIHFSK*LST*TIFILTEVIFQKKFYTIILVDPD 427
           +YF+ +      +HF +      + ++ E  +  KFY ++L +PD
Sbjct: 378 KYFIREITESNIVHFKR-----LVRVVLEASYSDKFYRLVLKNPD 417


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 298 LHG*FGKHYIHTFFQI--TINLNYIYSNRGYIPEKVL 402
           +H  F +   H F +   TI   Y+YSN   IP+ +L
Sbjct: 545 VHSFFAEATCHLFLEKLPTITKTYVYSNCKEIPDHIL 581


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 252 TSQL*SFTIVPPTLVMFNPVNLSQPSSKLF 163
           TS   S T VPP  +     NLS PSS L+
Sbjct: 116 TSHSSSTTFVPPATMGGGLNNLSSPSSSLY 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,838
Number of Sequences: 5004
Number of extensions: 44427
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)