Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4m05
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0831 + 6493897-6494100,6494195-6494256,6498047-6498087,649... 36 0.033
06_01_0411 + 2939148-2939354,2939517-2939578,2939712-2939752,294... 35 0.043
06_01_0409 + 2926072-2926275,2926423-2926484,2926598-2926638,292... 33 0.17
05_06_0093 - 25468271-25468320,25468393-25468433,25468592-254686... 32 0.31
09_04_0714 - 19685374-19685430,19685606-19685669,19686117-196862... 31 0.93
12_01_0791 + 7234021-7234221,7234801-7234862,7235441-7235481,723... 30 1.2
02_02_0177 + 7484526-7484723,7484913-7484974,7485606-7485646,748... 30 1.2
11_03_0139 + 10632020-10632211,10632876-10632937,10633141-106331... 29 2.2
06_03_0423 - 20624149-20624375,20625581-20625621,20625709-206257... 29 2.2
01_06_0704 + 31336622-31336825,31336948-31337009,31337040-313371... 29 2.8
01_01_0574 + 4263247-4263615,4263945-4263992,4264308-4264514,426... 27 8.7
>01_01_0831 +
6493897-6494100,6494195-6494256,6498047-6498087,
6498218-6498441
Length = 176
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 392 KKFYTIILVDPDSPPQVDGEF--YLHMLKSNIPVS 490
+ FYT+++VDPD+P D YLH L ++IP +
Sbjct: 63 RTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPAT 97
>06_01_0411 +
2939148-2939354,2939517-2939578,2939712-2939752,
2941060-2941289
Length = 179
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 392 KKFYTIILVDPDSPPQVDGEF--YLHMLKSNIP 484
+ FYT+++VDPD+P D YLH L ++IP
Sbjct: 64 RTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIP 96
>06_01_0409 +
2926072-2926275,2926423-2926484,2926598-2926638,
2927165-2927394
Length = 178
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 392 KKFYTIILVDPDSPPQVDGEF--YLHMLKSNIP 484
+ FYT+++VDPD+P + YLH L ++IP
Sbjct: 63 RTFYTLVMVDPDAPSPSNPNLREYLHWLVTDIP 95
>05_06_0093 -
25468271-25468320,25468393-25468433,25468592-25468653,
25468872-25469057
Length = 112
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 401 YTIILVDPDSPPQVDGEF--YLHMLKSNIP 484
YT++LVDPD+P D YLH + ++IP
Sbjct: 60 YTLVLVDPDAPSPSDPSLREYLHWMVTDIP 89
>09_04_0714 -
19685374-19685430,19685606-19685669,19686117-19686256,
19687916-19687969,19688407-19688451,19689480-19689517,
19689713-19689831,19689955-19690016,19691038-19691157
Length = 232
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +2
Query: 389 QKKFYTIILVDPDSPPQVDGEF--YLH 463
Q K YT+++VDPD+P E+ YLH
Sbjct: 34 QTKLYTLVMVDPDAPSPSKPEYREYLH 60
>12_01_0791 +
7234021-7234221,7234801-7234862,7235441-7235481,
7235711-7235940
Length = 177
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 392 KKFYTIILVDPD--SPPQVDGEFYLHMLKSNIP 484
+ YT+++VDPD SP YLH L +++P
Sbjct: 62 RALYTLVMVDPDAPSPSNPSKREYLHWLVTDVP 94
>02_02_0177 +
7484526-7484723,7484913-7484974,7485606-7485646,
7485845-7486101
Length = 185
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 401 YTIILVDPDSPPQVDGEF--YLHMLKSNIPVS 490
YT+++VDPD+P + YLH + ++IP S
Sbjct: 64 YTLVMVDPDAPNPSNPTLREYLHWMVTDIPAS 95
>11_03_0139 +
10632020-10632211,10632876-10632937,10633141-10633181,
10633667-10633883,10634229-10634271
Length = 184
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 392 KKFYTIILVDPD--SPPQVDGEFYLHMLKSNIP 484
+ YT+++VDPD SP YLH + ++IP
Sbjct: 59 RTLYTLVMVDPDAPSPSNPTKREYLHWMVTDIP 91
>06_03_0423 -
20624149-20624375,20625581-20625621,20625709-20625770,
20626147-20626338
Length = 173
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 401 YTIILVDPDSPPQVDGEF--YLHMLKSNIPVS 490
YT+++VDPD+P + YLH + ++IP S
Sbjct: 62 YTLVMVDPDAPNPSNPTLREYLHWMVTDIPSS 93
>01_06_0704 +
31336622-31336825,31336948-31337009,31337040-31337171,
31337304-31337341,31337825-31337872,31338545-31338780
Length = 239
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = +2
Query: 398 FYTIILVDPDSPPQVD---GEFYLHML 469
FYT++LVDPD+P + GE YLH L
Sbjct: 65 FYTLVLVDPDAPSPSNPSLGE-YLHYL 90
>01_01_0574 +
4263247-4263615,4263945-4263992,4264308-4264514,
4264670-4264826,4264958-4265041,4265785-4265909,
4268100-4268218,4268535-4268619,4269087-4269134
Length = 413
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -3
Query: 293 EIMVHPKIPAQVVKHH-SYDH 234
E VHP +P QV+ HH S+ H
Sbjct: 331 EYFVHPNVPGQVLLHHGSHRH 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,864,404
Number of Sequences: 37544
Number of extensions: 232213
Number of successful extensions: 379
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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