Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4m02
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    97   2e-21
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    49   6e-07
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    30   0.38 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   2.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.7  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   3.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   6.2  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   8.2  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 51/170 (30%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
 Frame = +2

Query: 212 RNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFI 391
           R  +V+V+GA   IG  +S+ LK N KVS+L L+D      G   ++ ++    +V  + 
Sbjct: 27  RAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINTTSNVVGYA 85

Query: 392 -GDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAIS 568
             D  LE+A++ +++V++ + +PRKPG TR+ +   NA +++ L  A      EA   + 
Sbjct: 86  PDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKYLVV 145

Query: 569 TNPINYLIPFASTVMYKYGCYNPSKMFGITHIDTSRSRSFVAKALKINAQ 718
           TNP+N  +P     + + G + P  +FG+T +D+ R+  F ++     A+
Sbjct: 146 TNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAE 195


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 35/172 (20%), Positives = 86/172 (50%), Gaps = 3/172 (1%)
 Frame = +2

Query: 212 RNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYD-DDDRIKGTELELSNL-PGGPSVSA 385
           +++++ ++GA + +GS  +  L  +   +++ + D +  + +G  ++L++  P       
Sbjct: 19  KSIKIVIVGAGN-VGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNHAAPLSHETRV 77

Query: 386 FIGDTNLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAI 565
           ++GD    +    +  VV+ +   +KPG TR  +L AN  + + + + +    ++A + +
Sbjct: 78  YLGDY---KDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLV 134

Query: 566 STNPINYLIPFASTVMYKYGCYNPSKMFGI-THIDTSRSRSFVAKALKINAQ 718
           +TNP++ L    +    K   +   ++ G  T IDT+R +  + K   ++ Q
Sbjct: 135 ATNPVDVL----TYATLKLTGFPAERVIGSGTIIDTARFQYLIGKLYGLDPQ 182


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 476  REQMLGANAPLIQ-RLCKAIAAQNQEAFVAISTNPINYLIPFASTVMYKYGCYNPSKMFG 652
            RE ++G N   ++ +L   + + + E    +++NP+N  I  A TV+Y     N S + G
Sbjct: 860  RESIIGLNPRTLEAKLLLYLKSLDVEIDALVASNPLNIRIMAAETVVYIIDKLNQSVLEG 919

Query: 653  ITHI 664
             T +
Sbjct: 920  KTSV 923


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 145 GPKNILLFICNAAKEKHTDLTKKKCTSIC 231
           G K +  F CN  KEK  D T     SIC
Sbjct: 23  GDKTVTCFYCNKKKEKIRDGTSTWTCSIC 51


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/81 (23%), Positives = 40/81 (49%)
 Frame = +2

Query: 182 LKKNTLILQKRNVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNL 361
           +KK +++  KR+ +++ + A S  GS+  L    +S +S L     +D + G   + +  
Sbjct: 216 IKKPSMVDHKRDSEINAVTAVSADGSFSPLTETLSSTISTL----SNDSLDGLSSQKNEF 271

Query: 362 PGGPSVSAFIGDTNLEQAIHS 424
            G  S S +I +  ++   +S
Sbjct: 272 TGFNSNSEWIPNDTVDYICNS 292


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 234 ITDTCTFLFCKISVFFFSCVANKQQNIFWAIFFQYFCKICFLTSHFTIFVTF 79
           I+D    +    S+F     +N   + FWAIF  +  +  FL S    F+ F
Sbjct: 380 ISDVALLIIALYSIFIILLSSNSHYSQFWAIFQAFVWR--FLHSIIHAFILF 429


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -3

Query: 195 VFFFSCVANKQQNIFWAIFF---QYFCKICFLTSHFTIFVTF 79
           VF  +C  +  QN +   F    Q+FCK C L  H  I   F
Sbjct: 212 VFCDNCNTSVHQNCYGIPFVPEGQWFCKKCLLAPHEVICCAF 253


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 153 FWA-IFFQYFCKICFLTSHFTIFVTFLLRGHDIC 55
           +WA +FF  F   C +++ +  F TFL  G  +C
Sbjct: 228 WWAWLFFTGFFLSCTISTKYVGFFTFLSIGLSVC 261


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 278 KRNSKVSKLHLYDDDDRIKGTELELSNLPGG 370
           +RN++ S  HL+   D ++   LE+ +LP G
Sbjct: 129 ERNARYSTSHLFLPSDFLQVNNLEIIHLPPG 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,412
Number of Sequences: 5004
Number of extensions: 63797
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)