Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4m01
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   9.5  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 314 MWF*IEGILKFTYFLCKVKIKVVKINRLYKKK 409
           +W    GI+  T  +C  K+ V  +N  ++ K
Sbjct: 139 LWILDSGIINNTQPMCSPKLHVFDLNTSHQLK 170


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 23  IQLVYVSVTKIMFIKFTDVVGVILLMCI 106
           +QLV++ + +++       VG  LLM +
Sbjct: 141 MQLVFMGIVELIMFTVNKYVGEHLLMTV 168


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 261 HISEIILSFFNG 296
           HIS   LSF NG
Sbjct: 409 HISNATLSFLNG 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,407
Number of Sequences: 438
Number of extensions: 1387
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)