Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4l24
         (104 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0178 - 15475614-15475850,15476716-15476808                       25   8.2  
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456...    25   8.2  

>10_08_0178 - 15475614-15475850,15476716-15476808
          Length = 109

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 31  LCGSSRTFNKLTFNASLSSRRRTH 102
           LCG +  F+K+T  A +S  +R H
Sbjct: 71  LCGGAYDFHKMTTLAGVSEGKRIH 94


>01_07_0227 +
           42144437-42144446,42145059-42145428,42145528-42145649,
           42145767-42145935,42146236-42146545,42146742-42146825,
           42147012-42147083,42147780-42147821,42147931-42148020,
           42148106-42148213,42148292-42148384,42148540-42148619,
           42148701-42148953,42151222-42151236
          Length = 605

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 104 VCVRLREDSEALKVNLLKVRELPHNSST 21
           + +RL +D+   +V   K+R+LP N  T
Sbjct: 254 ISLRLNDDTFMSRVRASKIRKLPWNEGT 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,240
Number of Sequences: 37544
Number of extensions: 18229
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 255467592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)