Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4l24
         (104 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction...    25   9.4  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    25   9.4  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    25   9.4  

>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
            molecule protein1, isoform c protein.
          Length = 1148

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 95   RLREDSEALKVNLLKVRELPHNSSTR 18
            R+RE++E  +  L K R  PH+ S R
Sbjct: 1004 RIREETEVPENQLQKTRVEPHDQSPR 1029


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
            molecule protein1, isoform d protein.
          Length = 1439

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 95   RLREDSEALKVNLLKVRELPHNSSTR 18
            R+RE++E  +  L K R  PH+ S R
Sbjct: 963  RIREETEVPENQLQKTRVEPHDQSPR 988


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
            molecule protein1, isoform a protein.
          Length = 1480

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 95   RLREDSEALKVNLLKVRELPHNSSTR 18
            R+RE++E  +  L K R  PH+ S R
Sbjct: 1004 RIREETEVPENQLQKTRVEPHDQSPR 1029


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,713
Number of Sequences: 27780
Number of extensions: 17129
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)