Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4l23
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 43 2e-04
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398... 41 0.001
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 37 0.015
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 34 0.10
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 30 1.3
08_01_0281 - 2290348-2290637,2290846-2291032 29 3.0
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 29 3.9
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 6.8
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 94 AEIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAED 216
+ I T++EMGF + RAE+AL VE A +WL +H E+
Sbjct: 1208 SSIATIVEMGFSRARAEEALRSVRTNSVEMATDWLFSHPEE 1248
>01_01_0543 +
3985771-3985866,3985965-3986145,3986668-3986780,
3986854-3987190,3987602-3987603,3987661-3987743,
3988017-3988116,3988330-3988463,3988711-3988788,
3989333-3989387,3990159-3990239,3990369-3990567,
3990609-3990699,3990770-3990892,3991440-3991528,
3992450-3992539,3992619-3992792,3992911-3993035,
3993246-3993372,3993826-3993998
Length = 816
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 100 IQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPS-NSQAGESS 264
+ L MGF +KA T+ GVE AM WLL+H +D ++ S +SQA E +
Sbjct: 636 VSQLASMGFNYLHCQKAAISTSNTGVEEAMNWLLSHMDDPDINDPISKDSQAAEQT 691
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 79 QT*IMAEIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNS 246
QT +QTL+ GF ++ A KALA + +E A +W+ +H E A SS P++S
Sbjct: 690 QTVDETSVQTLVSFGFQEDVARKALAASG-GNIERATDWIFSHPE--AFSSVPTDS 742
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 36.7 bits (81), Expect = 0.015
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 334 SLKCDECGKLFKNQDEIEYHAAKTNHSSF 420
SL+C +CG L ++ +E + HA TNH++F
Sbjct: 5 SLRCGDCGVLLRSVEEAQAHAEATNHANF 33
Score = 31.9 bits (69), Expect = 0.42
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 334 SLKCDECGKLFKNQDEIEYHAAKTNHSSF 420
+L C CGK ++Q E++ H +T H+ F
Sbjct: 42 NLVCAACGKPCRSQTEVDLHTKRTGHTEF 70
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 118 MGFPKERAEKALAVTNYKGVEPAMEWLLAHAED 216
MGF RA +AL + +E A+ WL H ED
Sbjct: 124 MGFTTARATRALHFSGNSTIEGAINWLSEHQED 156
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 118 MGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEP 237
MGFP R+ +AL + +E A+ WLL H D + P
Sbjct: 17 MGFPTARSIRALHFSGNSSLESAINWLLEHENDPDIDQLP 56
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 94 AEIQTLIEMGFPKERAEKALAVTNY 168
+ I TL+ MGF + A +ALA+TNY
Sbjct: 806 SSIATLVSMGFDRGSAIRALALTNY 830
>08_01_0281 - 2290348-2290637,2290846-2291032
Length = 158
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 220 RGPRREPKATPWQALHP 170
R PRR+ PWQA+HP
Sbjct: 88 RRPRRQHHGRPWQAIHP 104
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +3
Query: 369 KSR*D*VPRRKNESQ*FLRVY*RKKTIN*RGKEGATGAPRRENETKA*GK 518
KSR D V R +NE + N RG+EG + AP ENE A K
Sbjct: 182 KSREDLVTRTQNEKGTTNQSVQNFSVSNQRGREGFSAAPALENERTAANK 231
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 343 CDECGKLFKNQDEIEYHAA 399
C +CG++F D +E+H A
Sbjct: 243 CSQCGEVFNKADSLEHHQA 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,213
Number of Sequences: 37544
Number of extensions: 207157
Number of successful extensions: 459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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