Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4l14
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0557 + 11470259-11472307                                         30   1.7  
02_02_0552 + 11426761-11428815                                         30   1.7  
10_08_0575 + 18885403-18885483,18885591-18885949,18886320-18886617     29   2.9  
09_02_0628 + 11364169-11364233,11365135-11365648                       28   5.1  
04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115...    28   5.1  
03_05_0366 - 23505755-23506441                                         28   5.1  
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263     28   6.7  
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468           27   8.9  
05_03_0575 - 15643819-15644295                                         27   8.9  

>02_02_0557 + 11470259-11472307
          Length = 682

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 235 LYSRNTLLNSLKLSVTFGKLYPKAAKTGKES 327
           LY+R+T L +  ++ TFG + P+ A TGK S
Sbjct: 517 LYNRDTELQTTVVAGTFGYMAPELALTGKAS 547


>02_02_0552 + 11426761-11428815
          Length = 684

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 235 LYSRNTLLNSLKLSVTFGKLYPKAAKTGKES 327
           LY+R+T L +  ++ TFG + P+ A TGK S
Sbjct: 519 LYNRDTELQTTVVAGTFGYMAPELALTGKAS 549


>10_08_0575 + 18885403-18885483,18885591-18885949,18886320-18886617
          Length = 245

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   VRVVMVIIQYHCNHIIIEFY*TMY 73
           VR  M + Q  CN II +FY TMY
Sbjct: 109 VRAFMTLQQPWCNEIIAQFYATMY 132


>09_02_0628 + 11364169-11364233,11365135-11365648
          Length = 192

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 222 DYNSFIFQKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHN-IADTHALVTAVG 398
           D+  F F  H A F + +  +   I  G+  WE   +  + MQPT++ I  +   ++ V 
Sbjct: 93  DWTYFHFL-HFANFEQQLRQL--DIYYGKNKWEYSPLSLSSMQPTYSPIVASLCNISIVA 149

Query: 399 TGKGLRPGMANMV 437
           T   + P M N +
Sbjct: 150 TNTSVLPPMLNAI 162


>04_03_0566 +
           17209455-17209565,17210159-17210203,17211456-17211569,
           17211943-17212081,17212324-17212415,17213245-17213517
          Length = 257

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +3

Query: 267 KVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGK 407
           K+V++ W    +  E WE  +      +P H ++D++ +   + TG+
Sbjct: 10  KMVANSWHPFEEAAEPWEKSTGGHATRKPEHFLSDSYRINETMTTGE 56


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 377 CFSNGSRNGKRATTRYGEYGWSRGSW 454
           C S+G R+G     R G  GW R  W
Sbjct: 78  CGSSGGRHGGHRRQRQGGSGWERHPW 103


>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
          Length = 769

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = +3

Query: 201 YIDG*CMDYNSFIFQKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHA 380
           Y+DG C D +     K    F K  + +     + R    G + +  G  PT        
Sbjct: 313 YLDGGCKDIDECQRTKEYPCFGKCTNTIGSYTCECRPGTSGNATQENGCLPTDKFTLALK 372

Query: 381 LVTAVGTG 404
           +VT V  G
Sbjct: 373 VVTGVSVG 380


>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
          Length = 1078

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 106 QTNLDYIKELIIHSLIEFNDD 44
           Q  +DY KELI+ +L+E +DD
Sbjct: 474 QLGMDYYKELIMRNLLEPHDD 494


>05_03_0575 - 15643819-15644295
          Length = 158

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 412 SPFPVPTAVTKACVSAMLCVGCIPVDL 332
           SP P  +A   ACV+  + VGC P+ L
Sbjct: 117 SPTPERSADMGACVAIAVAVGCTPLSL 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,892,045
Number of Sequences: 37544
Number of extensions: 252712
Number of successful extensions: 590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)