Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4l14
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.2  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 339 TGMQPTHNIADTHALVTAVGTGKGLRPGMA 428
           TG+   H +   H L ++  TG    PG A
Sbjct: 132 TGLHGLHGLHGLHGLSSSAPTGSSCGPGAA 161


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 140 RHAIITSSLSHVMLCSCYLQLYRWMMYGL**FYIP 244
           RH+ I  S  +    +C +Q  R M Y L   YIP
Sbjct: 196 RHSTIHLSTGNYSRLACEIQFVRSMGYYLIQIYIP 230


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +1

Query: 10  GHGHHSVSLQSYHH 51
           GHGH  +    +HH
Sbjct: 420 GHGHSHIHATPHHH 433


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 360 NIADTHALVTAVGTGKGLRPGMANMV 437
           N+   +  V A+GTGK   P  A  V
Sbjct: 158 NVVVAYEPVWAIGTGKTATPQQAQEV 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,897
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)