Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4l12
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365           31   0.75 
01_01_0174 - 1496543-1496596,1496686-1498131,1498928-1499341           29   3.0  
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881...    29   4.0  
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    28   7.0  
05_06_0063 + 25289117-25290643                                         28   7.0  
06_03_0342 + 19737951-19738772                                         27   9.2  
03_05_0515 - 25102978-25103115,25103678-25104211,25104236-251048...    27   9.2  

>01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365
          Length = 550

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 509 DYLRAIVVVSGRSWKYMKASRRR 441
           +Y  A+VV +G++W Y++  RRR
Sbjct: 223 EYFGAVVVANGKAWPYLRVRRRR 245


>01_01_0174 - 1496543-1496596,1496686-1498131,1498928-1499341
          Length = 637

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -1

Query: 596 CDQCDIIIFF*DPALYLPVNDISSSHSRDDYLRAIVVVSGRSWKYMKASRRR 441
           C   D+ +   D   Y   +       + +Y   ++ V+G++W Y+   RRR
Sbjct: 291 CGDHDLHLVIADREFYTNGSISIDREWKPEYFGLVITVNGKAWPYLSVQRRR 342


>11_06_0529 +
           24687027-24687064,24687150-24687610,24687709-24688124,
           24688688-24688860,24689733-24689868,24689914-24690264,
           24691170-24691344,24691761-24691822
          Length = 603

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 319 ALIEALLVTFFKGFNFVLCEFVVAQWV 239
           AL+ + +V    G NF +C+F +A+W+
Sbjct: 320 ALLNSQIVVLVFGLNFQICDFGLAKWL 346


>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 195 SLAPATHVLPSETSHTHCATTNSHKTKLKPLKNVTRRAS 311
           S  P   + PS+T H   A T   K  L+     TRRAS
Sbjct: 340 SSTPRIRLEPSKTFHARAAETPPSKCSLERASQPTRRAS 378


>05_06_0063 + 25289117-25290643
          Length = 508

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 225 SETSHTHC-ATTNSHKTKLKPLKNVTRRASINA 320
           S++S   C AT +S + + +PL ++TR AS+NA
Sbjct: 349 SDSSVASCPATLSSEERRQRPLGSLTRPASLNA 381


>06_03_0342 + 19737951-19738772
          Length = 273

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 354 HTLP-SNMGV*SVIRILAHTPKSCWQPSWATSTGGFHI 464
           + LP S +G  S+ R+L  +     +PSWAT  G +H+
Sbjct: 123 NALPWSGVGAASLGRLLWSSGLLAARPSWATFAGAYHV 160


>03_05_0515 -
           25102978-25103115,25103678-25104211,25104236-25104880,
           25106601-25106711
          Length = 475

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 232 VSDGRTCVAGARLRVTITIFLLHIFTF 152
           V D R C +G    VT  +F+LH+  F
Sbjct: 56  VPDSRGCCSGFTSSVTRVVFILHLLAF 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,527
Number of Sequences: 37544
Number of extensions: 350493
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)