Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4l11
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   1.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   1.8  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    23   5.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    23   7.2  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    22   9.6  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    22   9.6  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 48  VKWLLEPIDIYDAKVPTNLRYKF*GLSIVATAAPPSKPK 164
           V+WLL    + +  + TNL+Y    L+I+   +  +K K
Sbjct: 244 VEWLLSRSSVDETSISTNLQYAVEILAIILANSKEAKLK 282


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 24  GRAHSPPGVKWLLEPIDIYDAK 89
           G  H P  V WLL P DIY  +
Sbjct: 236 GPLHDPNTVMWLLRP-DIYSGR 256


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 145 PHPPNRNALLLHGRNRQ 195
           PHP N   +LL G N Q
Sbjct: 97  PHPENSKIVLLMGSNAQ 113


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 114  IYISSWLALLRHRCLW 67
            I++S  L  L H CLW
Sbjct: 1821 IFVSEQLKSLLHSCLW 1836


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 115 SKVSV*LQRLPHPPNRNALLLH 180
           SK S+ L  +P PPN++    H
Sbjct: 250 SKSSLPLHHIPWPPNQHIKFAH 271


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 142 LPHPPNRNALLLHGRNR 192
           LP+  N   L LHG NR
Sbjct: 198 LPYTGNSRGLYLHGLNR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 960,561
Number of Sequences: 5004
Number of extensions: 15241
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)