Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4l11
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10...    27   1.6  
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    27   2.7  
01_07_0372 + 43134296-43134910                                         26   4.7  
03_04_0083 - 17146422-17148068                                         25   6.3  
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288...    25   6.3  
06_03_0735 - 23987349-23989196                                         25   8.3  
03_05_1118 - 30529768-30529945,30530336-30530432,30530451-305305...    25   8.3  

>03_01_0013 -
           105281-105552,105762-105838,105839-106524,106655-106738,
           106914-107114,107202-107309,107766-107855,108505-108551,
           109096-109276,110010-110135,110220-110386,110877-111072
          Length = 744

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 116 EFISQVGWHFCVID 75
           EF+SQ+ WH+ VID
Sbjct: 140 EFLSQIPWHYVVID 153


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 135 ATAAPPSKPKRITASRQK*AG 197
           A A PP +PKR+   R+K AG
Sbjct: 80  AVAPPPPQPKRLQGGRKKGAG 100


>01_07_0372 + 43134296-43134910
          Length = 204

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 83  RKSANQLEI*ILRSQYSCNGC 145
           R+S++Q+E+ +LR    C GC
Sbjct: 117 RESSSQVEVVVLRVSLHCKGC 137


>03_04_0083 - 17146422-17148068
          Length = 548

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 99  WLALLRHRCLWAPV 58
           WLA L HR  WAPV
Sbjct: 507 WLAQLLHRFEWAPV 520


>03_01_0371 +
           2883418-2883967,2884097-2884176,2886283-2886339,
           2887152-2887207,2888006-2888079,2889511-2889798,
           2890043-2890120,2890359-2890882,2891315-2891438,
           2891619-2891767,2891983-2892137,2892477-2892682,
           2892768-2892901,2892983-2893284,2893514-2893617,
           2893858-2893928
          Length = 983

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -1

Query: 140 RCNYTETLEFISQ-VGWHFCV 81
           RCNYTE+  F  Q   W  CV
Sbjct: 776 RCNYTESKLFFKQATSWRPCV 796


>06_03_0735 - 23987349-23989196
          Length = 615

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 115 SKVSV*LQRLPHPPNRNALLLHGRNRQGG 201
           S VS+    L HPP R    LHGR  + G
Sbjct: 40  SPVSLAAVLLRHPPPRLGCCLHGRAARAG 68


>03_05_1118 -
           30529768-30529945,30530336-30530432,30530451-30530544,
           30531295-30531591,30531674-30532075
          Length = 355

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 39  PPGVKWLLEPIDIYDAKVPTNLRYKF*GLSIVATAAPPSKPKRITASRQK 188
           P   KW+ +PID YD  +    + +   L+  +  +PP+K  R    ++K
Sbjct: 137 PEARKWINKPIDHYDRLLELFGKDRERCLASGSPKSPPAKKARRDPPKEK 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,849,630
Number of Sequences: 37544
Number of extensions: 114379
Number of successful extensions: 262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)