Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4l09
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 1.9
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 26 4.4
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 5.8
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 5.8
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 5.8
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 7.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 7.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.7
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 359 PSTRLSKSPMPTLHP-TKKKSMQPRPYCRMTR*PWKTSMMPILTW--PLIPSRSQPSGH- 526
P + SP P L P ++ S++ + ++ +PI T PLIPS SQ S H
Sbjct: 42 PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101
Query: 527 TLRKSS 544
T+R S
Sbjct: 102 TIRHES 107
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -2
Query: 594 SCSCS-------RLNLFLWVDIVELLFRSVWPEGWLLDGIKGQVRMGIIEVFHGHLV 445
SCSC+ L+LFL +D +ELL R + L D + Q + +++ H +
Sbjct: 546 SCSCNLRENQPGSLSLFLQIDALELLLRKTALKLKLTDAVYQQEMLNVVQRCVSHFL 602
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 379 ESNANIASYQKEINATKALLPYDQMTMEDFYDAH----PDLALDPIKKPTFWPHTPEEQL 546
E +A I ++ + PYD + +ED +++ P++ LDP F + PEE
Sbjct: 661 EDSAIIGPWKSGTTLRNLIYPYDTIELEDSWNSSWGCIPNIELDPY---AFKLYVPEEDF 717
Query: 547 DYVDP 561
DP
Sbjct: 718 IENDP 722
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 627 IASNTFTILVCSCSCSRLNLFLW-VDIVELLFRSVWPEGWLL 505
++S + T L SC R +LF+W V +LL+ + W + L
Sbjct: 704 MSSISLTFLCISCFIMRHHLFVWSVFSPKLLYNASWASMYFL 745
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 130 QKAHLAAFKIKSDNYLRRVLANPPEPPKIN 219
Q + + FK S++YL + ++ PE P++N
Sbjct: 72 QSSTESLFKADSEDYLCKKVSKGPESPRVN 101
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 515 PSGHTLRKSSSTMSTQRNKFSLLQLQLHTNIVKVLLA 625
PS L+KS +T ST+ L QLQ +++LLA
Sbjct: 406 PSHSLLQKSKNTSSTKALTSHLEQLQQENQQLRMLLA 442
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 146 LLSK*NPIIISEGY*PIHLNRPRLTGLCTNRLYLFL 253
LL NPI S HLN+ +T LC N FL
Sbjct: 259 LLVNLNPIYFSTARRFEHLNKSLITTLCLNNYLSFL 294
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 52 KRRKMAKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAV 228
+R A R + + WA+L + + + SD+YL L NP K + A+
Sbjct: 301 ERSVSAMRNTFQLIKWASLLKYPLVPELTPAVVENLDSDSYLAIALINPTSQVKASKAI 359
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +1
Query: 340 WNQVKNAIDAFIQESNANIASYQKEINATKALLPYDQMTMEDFYDAHPDLALDPIKKPTF 519
+ Q K A Q+ YQ+++ + +ALL + +AHP + P P+
Sbjct: 114 FQQEKEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPAPS- 172
Query: 520 WPHTPEEQLDYVDP 561
P+TP + + P
Sbjct: 173 -PNTPSGNANQLTP 185
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 7.7
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +2
Query: 386 MPTLHPTKKKSMQPRPYCRMTR*PWKTSMMPILTWPLIPSRSQPSGHTLRKSSSTMSTQR 565
+P L P S +P+P R S M + P +PS S SG +L SS S+ R
Sbjct: 460 VPDLPPLGSLSSRPKPSSSSRRRSQSLSAMLKTSNPYMPSPSLLSG-SLANSSEHSSSPR 518
Query: 566 NKFSLLQLQ 592
+ S + Q
Sbjct: 519 LRGSPIHNQ 527
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,825
Number of Sequences: 5004
Number of extensions: 68071
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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