Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4l01
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical pr...    40   0.002
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    33   0.17 
U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical pr...    31   0.68 
Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    29   2.7  
Z68760-15|CAL44969.1|  462|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z68760-13|CAD30434.1|  423|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z68760-12|CAD27623.1|  436|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z68760-11|CAA92997.2|  438|Caenorhabditis elegans Hypothetical p...    29   3.6  
X68070-1|CAA48207.1|  438|Caenorhabditis elegans Lin-3 protein.        29   3.6  
AL032641-9|CAL44964.1|  462|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL032641-7|CAD30455.1|  423|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL032641-6|CAD27613.1|  436|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL032641-5|CAA21649.2|  438|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF098995-11|AAC67488.2|  415|Caenorhabditis elegans Hypothetical...    28   8.4  
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U88308-6|AAB42320.1|  180|Caenorhabditis elegans Hypothetical
           protein C32E8.3 protein.
          Length = 180

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
 Frame = +3

Query: 534 DKWMKQAKVIDGKKITTTDTAIHFKKL--KSVKLGIDDYQKFL----DDLAKNKKV---- 683
           DKW+K A V+D K IT T T I F K+     K   D+ +K L    +D A+  K     
Sbjct: 38  DKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDETKKVLAFVAEDRARQSKKPIQD 97

Query: 684 ELDEIKKKLTTCGQPGI 734
           ELD I +KL     P +
Sbjct: 98  ELDAITEKLAKLEAPSV 114


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 418 MERPVKARITPYLSRK-PSRRFPNLEIPSP 504
           +ERPV AR TPY+ R  P+R  P +E P P
Sbjct: 174 IERPVPARPTPYIERPVPARPAPYIERPEP 203



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 418 MERPVKARITPYLSRKPSRRFPNLE----IPSPMEKPSRSR 528
           +ERPV AR  PY+   P+R  P +E     P P  +P R+R
Sbjct: 210 IERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQPPRTR 250



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +1

Query: 418 MERPVKARITPYLSR-KPSRRFPNLE-----IPSPMEKPSRSRKATNG*SKPKSLMERK* 579
           +ERPV AR  PY+ R +P+R  P +E      P+P  +P+ +R A            R  
Sbjct: 186 IERPVPARPAPYIERPEPARPAPYIERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQ 245

Query: 580 QQRTRPF 600
             RTRP+
Sbjct: 246 PPRTRPY 252


>U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical
           protein F57F4.1 protein.
          Length = 461

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 485 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF 369
           +GK   GFL R  + LA+T   + C  RV V  +D ++F
Sbjct: 321 YGKIFGGFLMRKALELAYTNAKLYCKGRVAVRSMDHIEF 359


>Z83223-6|CAB05719.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 30/116 (25%), Positives = 48/116 (41%)
 Frame = +3

Query: 339 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAI 518
           T  AVE+ T+EV +   E   AP A+   SS+   N +               K   K +
Sbjct: 308 TTKAVEEATEEVTEEATEATEAPVATTKESSEMHVNTI------RNMIRSASEKDLSKYV 361

Query: 519 TLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVE 686
           TL    K+ +  ++ + KK+T T         K  KL  D   + L +  K+ ++E
Sbjct: 362 TLISEGKFSELFELAEQKKLTLTSKFDEKLSSKMAKLK-DLINEALSEKEKSGEIE 416


>Z81538-6|CAB04387.1|  884|Caenorhabditis elegans Hypothetical
           protein E01G4.6 protein.
          Length = 884

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 30/116 (25%), Positives = 48/116 (41%)
 Frame = +3

Query: 339 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAI 518
           T  AVE+ T+EV +   E   AP A+   SS+   N +               K   K +
Sbjct: 308 TTKAVEEATEEVTEEATEATEAPVATTKESSEMHVNTI------RNMIRSASEKDLSKYV 361

Query: 519 TLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVE 686
           TL    K+ +  ++ + KK+T T         K  KL  D   + L +  K+ ++E
Sbjct: 362 TLISEGKFSELFELAEQKKLTLTSKFDEKLSSKMAKLK-DLINEALSEKEKSGEIE 416


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -1

Query: 485 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 351
           +GK   GFL R  + LA T   + C  RV +  +D ++F     + H+LH
Sbjct: 301 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 350


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -1

Query: 485 FGKRLEGFLER*GVILAFTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 351
           +GK   GFL R  + LA T   + C  RV +  +D ++F     + H+LH
Sbjct: 256 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 305


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           +K+ K + G++  + D  +H +KL S+     D+Q+ + DL++++ V    I KK+    
Sbjct: 460 LKELKAVYGQEEDSLD--LH-EKLLSLPFDQYDWQEMIKDLSRHRSVVYQLINKKMNVDD 516

Query: 723 QPGITSHVTKSPAA 764
              I+  + K P +
Sbjct: 517 IRTISPFLAKLPTS 530


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           +K+ K + G++  + D  +H +KL S+     D+Q+ + DL++++ V    I KK+    
Sbjct: 460 LKELKAVYGQEEDSLD--LH-EKLLSLPFDQYDWQEMIKDLSRHRSVVYQLINKKMNVDD 516

Query: 723 QPGITSHVTKSPAA 764
              I+  + K P +
Sbjct: 517 IRTISPFLAKLPTS 530


>Z68760-15|CAL44969.1|  462|Caenorhabditis elegans Hypothetical
           protein F36H1.4d protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 362 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 421

Query: 723 QPGIT 737
            P  T
Sbjct: 422 PPAHT 426


>Z68760-13|CAD30434.1|  423|Caenorhabditis elegans Hypothetical
           protein F36H1.4c protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 323 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 382

Query: 723 QPGIT 737
            P  T
Sbjct: 383 PPAHT 387


>Z68760-12|CAD27623.1|  436|Caenorhabditis elegans Hypothetical
           protein F36H1.4b protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 336 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 395

Query: 723 QPGIT 737
            P  T
Sbjct: 396 PPAHT 400


>Z68760-11|CAA92997.2|  438|Caenorhabditis elegans Hypothetical
           protein F36H1.4a protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397

Query: 723 QPGIT 737
            P  T
Sbjct: 398 PPAHT 402


>X68070-1|CAA48207.1|  438|Caenorhabditis elegans Lin-3 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397

Query: 723 QPGIT 737
            P  T
Sbjct: 398 PPAHT 402


>AL032641-9|CAL44964.1|  462|Caenorhabditis elegans Hypothetical
           protein F36H1.4d protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 362 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 421

Query: 723 QPGIT 737
            P  T
Sbjct: 422 PPAHT 426


>AL032641-7|CAD30455.1|  423|Caenorhabditis elegans Hypothetical
           protein F36H1.4c protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 323 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 382

Query: 723 QPGIT 737
            P  T
Sbjct: 383 PPAHT 387


>AL032641-6|CAD27613.1|  436|Caenorhabditis elegans Hypothetical
           protein F36H1.4b protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 336 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 395

Query: 723 QPGIT 737
            P  T
Sbjct: 396 PPAHT 400


>AL032641-5|CAA21649.2|  438|Caenorhabditis elegans Hypothetical
           protein F36H1.4a protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 543 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 722
           ++    I  + I   DT  H+K +  V++   +Y   +D    + +    E+ K   TC 
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397

Query: 723 QPGIT 737
            P  T
Sbjct: 398 PPAHT 402


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +3

Query: 492 DPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 671
           D +    A  +   + ++KQ  +   +       +I F K+   K   +DY+K + +  K
Sbjct: 418 DDEEKSTAKLVKNIEGFLKQVTLRFPRSCKLYKISIQFTKISIFKFSANDYEKHITNAKK 477

Query: 672 NKKVELDEIKK 704
            KK     I+K
Sbjct: 478 EKKENEPNIRK 488


>AF098995-11|AAC67488.2|  415|Caenorhabditis elegans Hypothetical
           protein F58E1.11 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/60 (35%), Positives = 33/60 (55%)
 Frame = +3

Query: 537 KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTT 716
           KW++     DGK+I T  T   FK++KS K+ +DD ++      K K V ++E    LT+
Sbjct: 330 KWLR-----DGKQIGTVFTLSSFKEIKS-KILLDDVKRRF----KEKIVRVEESNGDLTS 379


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/96 (21%), Positives = 39/96 (40%)
 Frame = +3

Query: 315 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGD 494
           K S +  + +A +  +   V  VKLENG         + K ED +L              
Sbjct: 170 KFSLDFGDAEAIIRMLDSVV--VKLENGTEDELKAVLAQKLEDESLADIKKDENGNGTEQ 227

Query: 495 PKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIH 602
           PK + +    S + + +++  + DG + ++    IH
Sbjct: 228 PKEEPEVKQESGATEELEEGAIEDGTEKSSNKVNIH 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,477
Number of Sequences: 27780
Number of extensions: 335459
Number of successful extensions: 1101
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)