Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k24
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.0  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    27   3.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   8.2  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    25   8.2  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   8.2  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = +1

Query: 466  VYMSKRTNRTCHN-NNKIFEVGYPVRDDFYPIYETCFDEWRLTP----LYSVYTQK 618
            VY+   +   C N +N +FE+    + + YP ++  FD  +LT     +++VY++K
Sbjct: 1405 VYILSLSPDVCSNKSNSLFELVGLSKHNLYPSHDDLFDVTQLTEVLELVFNVYSEK 1460


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 334 VRHPNANKHFEVATVTCQGGDTFTNNDWITAPS 432
           + H    KH +++T+T +  D F    W  +PS
Sbjct: 48  LNHGKLAKHMDISTLTAKDFDAFDCKLWTMSPS 80


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 466  VYMSKRTNRTCHNNNKIFEV 525
            V +S+  +R CH NNK++++
Sbjct: 1898 VALSQMISRVCHPNNKVYKI 1917


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 467 YT*ASVRIGPVTIITRFLKSVTQSATISTQFTKPASTSGVSPP 595
           YT +SV I   T  +  L   T  AT+S     PA+ S +S P
Sbjct: 229 YTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSP 271


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 449 EKNKKLEGAVIQSLFVNVSPPWHVTVATSKCLFAFGCLTLDSPQLKVRVSPLSI 288
           E N K  G V  ++ V    P+   V    CLF    L  DSP++   V+  S+
Sbjct: 67  ENNPK--GDVHYTIEVETEDPY---VTKESCLFVLSTLYCDSPRIPAEVNVCSV 115


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 427 PSSFLFFSCDIPPVYMSKRTNRTCHNNN 510
           P  F+FF  D+ P Y    T    H +N
Sbjct: 299 PIKFIFFYQDVRPPYFGSYTKTHSHGSN 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,708
Number of Sequences: 5004
Number of extensions: 55982
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)