Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k24
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    29   3.7  
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518...    29   4.9  
06_01_0788 - 5895600-5896378,5896519-5896846                           28   8.5  
05_04_0031 + 17353292-17354353                                         28   8.5  

>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 505 YCDRSDSYACSCIPGEYHTRKIRSW 431
           YCD S    CSC+PG +  R  + W
Sbjct: 304 YCDTSTPTLCSCLPG-FQPRSPQQW 327


>09_06_0192 -
           21450158-21450276,21451084-21451573,21451750-21451862,
           21451992-21452376,21452461-21452529,21453165-21453264,
           21454465-21454637,21454737-21454782,21454879-21454954,
           21455160-21455196,21455799-21456041
          Length = 616

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 478 KRTNRTCHNNNKIFEVGYPVRDDFYPIYETCFDEWRLT-PLYSVYTQK 618
           K+ N+  + N + FEV      DF   +  CFD   LT   YS +TQK
Sbjct: 153 KKLNKGAYGNLEQFEVSVRAYGDFCWPFLCCFDFPSLTVSTYSSHTQK 200


>06_01_0788 - 5895600-5896378,5896519-5896846
          Length = 368

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 277 GNVEIDNGETLTLSCGESRVRHPNANKHFEV-ATVTCQGGDTFTNNDWITAPSSFLFFSC 453
           GN  I+NG T  +S G   + +P+  K FE+ A +     +TF   D I   + + F   
Sbjct: 300 GNKVIENGYTDLVSFGRLFLANPDLPKRFELDAPLNKYDRNTFYTQDPIVGYTDYPFLDE 359

Query: 454 D 456
           D
Sbjct: 360 D 360


>05_04_0031 + 17353292-17354353
          Length = 353

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 229 PVIIRNGRLLEPTDKYGNVEIDNGETLTL 315
           P ++R G LLEP+D +G +E+D G  L++
Sbjct: 107 PGLLRAGVLLEPSDDFG-LELDIGPDLSV 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,548
Number of Sequences: 37544
Number of extensions: 351678
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)