Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4k24
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr... 29 2.5
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 29 4.4
U80837-2|AAB37902.1| 315|Caenorhabditis elegans Hypothetical pr... 29 4.4
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 29 4.4
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 29 4.4
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 29 4.4
Z81051-9|CAD21703.1| 531|Caenorhabditis elegans Hypothetical pr... 28 5.8
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 28 7.7
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 28 7.7
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 28 7.7
>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
protein C05D12.2 protein.
Length = 1052
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 301 ETLTLSCGESRVRHPNANKHFEVATVTCQGGDTFTNNDWITAPSSFLF 444
E T++ G+S + A+K + T+ CQ G T+ +I + ++ LF
Sbjct: 341 EATTVAEGDSYRLYSRASKIGDTVTIFCQNGTTYNYRMFIQSKNTLLF 388
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 362 KCLFAFGCLTLDSPQLKVRVSPLSISTFPYLSVGSRSLPLRII 234
KC F FG T D +L ++ + Y+S G +LPL +
Sbjct: 160 KCFFKFGSWTYDGYKLDLQPATGGFDISEYISNGEWALPLTTV 202
>U80837-2|AAB37902.1| 315|Caenorhabditis elegans Hypothetical
protein F07E5.2 protein.
Length = 315
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -3
Query: 618 LLRVNRIKGGE-TPLVEAGFVN--WVEIVADWVTDFKNLVIIVTGPIRT 481
+LR+ I+G E L + GF + W+E VA+ + K +++ P RT
Sbjct: 86 VLRIQDIRGQEPATLTKPGFTDKLWIEHVAEVLFQNKGVILSCDAPFRT 134
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 362 KCLFAFGCLTLDSPQLKVRVSPLSISTFPYLSVGSRSLPLRII 234
KC F FG T D +L ++ + Y+S G +LPL +
Sbjct: 160 KCFFKFGSWTYDGYKLDLQPATGGFDISEYISNGEWALPLTTV 202
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 362 KCLFAFGCLTLDSPQLKVRVSPLSISTFPYLSVGSRSLPLRII 234
KC F FG T D +L ++ + Y+S G +LPL +
Sbjct: 160 KCFFKFGSWTYDGYKLDLQPATGGFDISEYISNGEWALPLTTV 202
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 362 KCLFAFGCLTLDSPQLKVRVSPLSISTFPYLSVGSRSLPLRII 234
KC F FG T D +L ++ + Y+S G +LPL +
Sbjct: 160 KCFFKFGSWTYDGYKLDLQPATGGFDISEYISNGEWALPLTTV 202
>Z81051-9|CAD21703.1| 531|Caenorhabditis elegans Hypothetical
protein C55A6.10 protein.
Length = 531
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 190 CILNSRRDFGQPLPVIIRNGRLLEPTDK 273
C + +R+ G PL RN RLLEP K
Sbjct: 95 CAVKKKREMGMPLFQPSRNRRLLEPRRK 122
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 268 DKYGNVEIDNGETLTLSCGESRVRHPNANKHFEVATVTCQGGDTFTNNDWITAPSSFLFF 447
DK ++++ +G T+T + + N++ E+ +T + T N+W+TA L
Sbjct: 508 DKNASLDVKSGGTITRRTQYVIIMTRDRNENNEITQLTFYFKNEATRNNWMTA---LLLS 564
Query: 448 SCDIPPVYMSKRTN 489
++ P + TN
Sbjct: 565 KSNVSPTDYLRDTN 578
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 268 DKYGNVEIDNGETLTLSCGESRVRHPNANKHFEVATVTCQGGDTFTNNDWITAPSSFLFF 447
DK ++++ +G T+T + + N++ E+ +T + T N+W+TA L
Sbjct: 540 DKNASLDVKSGGTITRRTQYVIIMTRDRNENNEITQLTFYFKNEATRNNWMTA---LLLS 596
Query: 448 SCDIPPVYMSKRTN 489
++ P + TN
Sbjct: 597 KSNVSPTDYLRDTN 610
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 268 DKYGNVEIDNGETLTLSCGESRVRHPNANKHFEVATVTCQGGDTFTNNDWITAPSSFLFF 447
DK ++++ +G T+T + + N++ E+ +T + T N+W+TA L
Sbjct: 540 DKNASLDVKSGGTITRRTQYVIIMTRDRNENNEITQLTFYFKNEATRNNWMTA---LLLS 596
Query: 448 SCDIPPVYMSKRTN 489
++ P + TN
Sbjct: 597 KSNVSPTDYLRDTN 610
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,150,114
Number of Sequences: 27780
Number of extensions: 326183
Number of successful extensions: 989
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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