Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k18
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    29   0.65 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    28   1.1  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    27   2.0  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    27   3.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.1  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +3

Query: 69  IKGVLYVVNVIYAVFGLVTAATGIWFF---VQLAEFVSLRNSNHYLLDYRVYWPQVAPWL 239
           + G + V+ ++Y++  ++   +   F+   +  ++F SL    H +  Y VYW     ++
Sbjct: 364 LAGFILVMFLLYSLAPILFRMSSATFYNISLLTSDFWSLVIGIH-VFGYHVYWLYPIAFV 422

Query: 240 FILLGLFVMMV 272
            I+LGLFV  V
Sbjct: 423 LIILGLFVYHV 433


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 396 DGEDTDRFIKDTVYDGYYNSQSNPDVF 476
           D  D  +FI  T+YD Y   Q NP+VF
Sbjct: 449 DAHDFQKFINQTLYDFY---QQNPEVF 472


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 399 GEDTDRFIKDTVYDGYYNSQSNPD 470
           G D +   KD  + GYYNS++N +
Sbjct: 107 GHDEEEADKDASFTGYYNSRNNDE 130


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 171 SLRNSNHYLLDYRVYWPQVAPWLFILLGLFVMMVAFCG 284
           SL     YL     +W Q+ PW F++L  F+ +V   G
Sbjct: 74  SLFGGIFYLHPAFSFWVQMHPW-FLILNFFISLVVLFG 110


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 90  VNVIYAVFGLVTAATGIWFF 149
           + V+Y V G+VT    +W+F
Sbjct: 675 IRVLYMVLGIVTVGILVWYF 694


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 116 TENSVDHIDNVQHS---FDKFLLGHFDFVRIVRALRSLS 9
           T NS+D +DN++H    F     G F F  +  A   LS
Sbjct: 94  TANSIDTLDNIRHKNPVFKAETSGWFKFCSVTAANSGLS 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,286
Number of Sequences: 5004
Number of extensions: 46824
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)