Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k18
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0212 + 14342316-14342686,14343471-14343521,14345812-14346940     30   1.6  
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277...    29   3.6  
05_02_0120 - 6797954-6798970,6799466-6799951                           29   4.8  
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278...    28   6.3  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    28   8.4  
11_05_0013 + 18383235-18383702,18385570-18386571                       28   8.4  
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467           28   8.4  
05_05_0016 - 21542300-21542886,21542956-21543286,21543310-215434...    28   8.4  

>08_02_0212 + 14342316-14342686,14343471-14343521,14345812-14346940
          Length = 516

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +3

Query: 507 RCCGANDARDYRSWRNDLPLTC----CLDSYYRASCDFTDKEAN 626
           R C AN  RD  +  N L L C    C   YY  SC+   ++ N
Sbjct: 392 RWCVANPGRDLNNVENHLKLACTMADCTTLYYGGSCNAIGEKGN 435


>11_01_0361 +
           2772193-2772334,2773457-2773587,2773872-2773985,
           2774303-2774459,2774577-2775000,2775238-2776030,
           2776182-2776241,2776952-2777593
          Length = 820

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 269 GGVLRMVRR*QREPRTSGHLRDLPDPHH 352
           GGVLR  R   REP     +RD+PD  H
Sbjct: 636 GGVLRRRRGAGREPAVRQRVRDVPDDMH 663


>05_02_0120 - 6797954-6798970,6799466-6799951
          Length = 500

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 549 RNDLPLTCCLDSYYRASCDFTDKEANERLGCAKVASVYTKIISSSVAGASLL 704
           R+D  L C +D+ Y+     T+ E    L  A  A  +T   +S+ AGA LL
Sbjct: 266 RHDDMLQCLIDARYKDGRATTETEVAGMLVAALFAGQHTSSSTSTWAGARLL 317


>06_01_0389 +
           2779790-2779891,2780378-2781912,2782087-2782135,
           2782620-2782683,2782755-2782843
          Length = 612

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 689 GDRRADDFGVHGCDLGTA 636
           G RR   FG+HGCDL T+
Sbjct: 244 GCRRLAKFGIHGCDLVTS 261


>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
            25575208-25575555,25576540-25576633
          Length = 1588

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 332  PVDAQKSSALFVSAAPSAKRHHHNKQTQQDEEPWRDLW 219
            P +  +++    +AA S++RHH  +     E P   LW
Sbjct: 1293 PTNRSRAATATATAAASSQRHHRRRNGGSTEAPPLGLW 1330


>11_05_0013 + 18383235-18383702,18385570-18386571
          Length = 489

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 564 LTCCLDSYYRASCDFTDKEANERLGCAKVASVYTKIISSSVAGASLL 704
           L C +DS Y++    T+ E    L  A  A  +T  I+S+  GA +L
Sbjct: 257 LQCFIDSKYKSGRSTTEGEITGLLIAALFAGQHTSSITSTWTGAYML 303


>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
          Length = 945

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 204 YRVYWPQVAPWLFILLGLFVMMVAFCG 284
           +R+ +PQ+ P   + +GLF  M+  CG
Sbjct: 93  FRLEFPQLTPNALVRIGLFEWMIRSCG 119


>05_05_0016 -
           21542300-21542886,21542956-21543286,21543310-21543419,
           21543526-21544069,21544190-21544345
          Length = 575

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 SNHYLLDYRVYWPQVAPWLFILLGLFVMMVAFCG 284
           SN   L +++ +PQ+ P   + +G+F  M+  CG
Sbjct: 47  SNRKSLVFKLGFPQLTPNALVRVGIFKWMIRSCG 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,936
Number of Sequences: 37544
Number of extensions: 355215
Number of successful extensions: 1356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)