Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k16
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    54   2e-08
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.69 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   3.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   4.9  
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    26   6.4  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.5  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 27/105 (25%), Positives = 55/105 (52%)
 Frame = +2

Query: 176 ADTDEQLESCLNRFLPPVILKLSSSHEQVRTKVMELLVHVNKRVKCRAEVKLPVQTLLQL 355
           A++++  +S ++ FL P++LKL S HE VR K + +  H+  R+   A+  LP++ L+  
Sbjct: 19  AESEDSFQSLVSVFLCPILLKLDSPHESVRNKTISIANHIMTRLNNNAQAILPLEALVSQ 78

Query: 356 YMDRXXXXXXXXXXXXYITMGFPRLPHEQQIILAPSLIEAMDNKP 490
           Y++             +I++G  R+P  + + L    +  ++  P
Sbjct: 79  YVE-ANQPLRKRFLLAFISIGEKRIPCSENLALLQICLNHVNEYP 122


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 604 KFYY*CGQLWLLFQI*IRFLNFTQQRHYQH*KAVLMSLGLI 482
           +F+Y CG  ++LF+I IR    TQ+ +Y   K ++ +  +I
Sbjct: 233 QFFYVCGIPYILFKI-IRMYTSTQKEYYASSKQMITTFSVI 272


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 206  LNRFLPPVILKLSS----SHEQVRTKVMELLVHVNKRVKCRAEVKLPVQTLLQLYMD 364
            L+ FLP +I KLS     SH QVR    + L+     V    E++  V TLL+   D
Sbjct: 1516 LSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGD-VISNPEIQTLVPTLLKALSD 1571


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 427 ITP*TTNYISSITDRSNG 480
           I P TTNY SSI + SNG
Sbjct: 230 IRPNTTNYRSSIQENSNG 247


>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 721 KDFLNQSLVRFHTHSWWNLKLSLSL 647
           K +L +   R H H  W+LK S SL
Sbjct: 10  KPWLQEKTPRLHLHPTWDLKASKSL 34


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 354 SCRSVCTGNFTSARHFTLLFTCTSSSITLVRTC 256
           +CR   TGN + A+ F +   C       VR C
Sbjct: 176 TCRLALTGNISEAKAFIVEIMCAGVVTNCVRWC 208


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 530 EALPTLEGRLDVPGAYYPL 474
           E LPTL G+L+V    YP+
Sbjct: 265 ELLPTLSGKLEVHAGNYPM 283


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -2

Query: 314 DISPSYLHAPVAPSL*CGPVHVKMITSI*QAAGIY*GNFRAAHQYQHYQVAKRLYPVTTS 135
           DI      + V+ SL   P  +KM+    Q+A  Y  +  + +    +  A   YP  + 
Sbjct: 137 DIDDDRNKSAVSKSLVRHPHRLKMLPFGIQSAHPYISSLNSNYPTT-WHFASHYYPTDSK 195

Query: 134 HLSNHFHSQIHPSRT 90
            L  +  +++HPS T
Sbjct: 196 QLVKYHPTEVHPSWT 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,440
Number of Sequences: 5004
Number of extensions: 57998
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)