Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4k16
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    47   2e-05
AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine r...    30   2.0  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    29   4.5  
U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z82059-9|CAB04875.1|  292|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF129111-1|AAD37121.1|  292|Caenorhabditis elegans cell division...    28   6.0  

>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
           protein D2045.2 protein.
          Length = 1792

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
 Frame = +2

Query: 173 NADTDEQLESCLNRFLPPVILKLSSSHEQVRTKVMELLVHVNKRVKCRAEVKLPVQTLLQ 352
           NA++D +L++  +R L  V+       E ++  V E L H NK VK    ++LPV  LL+
Sbjct: 16  NANSDAKLQTITDRHLCDVLEFAGRKQEHIQL-VTEFLTHFNKVVKSNLAIRLPVPRLLE 74

Query: 353 LYMDRXXXXXXXXXXXXYITMGFPRLPHEQQIILAPSLIEAMDNKPQ--GHQDGLLMLVM 526
           L+  +            Y+ M   R+   +Q+   P  + +   KP    +   +L L +
Sbjct: 75  LF--QGPSAISSNFSLIYLKMAKDRIQAAEQLEFLPVYLTSFSKKPNDLNYIYDILSLCL 132

Query: 527 PLLGEI 544
           P L E+
Sbjct: 133 PGLHEL 138


>AF022980-11|AAG24189.1|  330|Caenorhabditis elegans Serpentine
           receptor, class j protein49 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 330 YLYKHFCNFTWIVIPTVL*LIFPSFTLQWG 419
           YL + FC FT++V P  + LIF   + Q+G
Sbjct: 9   YLPRIFCGFTYVVNPVFIYLIFTEKSSQFG 38


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 539 EIKETDLN--LKEKPKLATLIVK---FATDILLLPYRALPNQGETEFQVPPGMSMKSYKR 703
           EIKE D +  +K KP+    +V+     T++  LPY   PN+ E  F + P  S +   R
Sbjct: 38  EIKEFDKDGGIKYKPEFVYSLVETRELLTNVCKLPYIFFPNEDEDVFGLTPDKSKQHIVR 97


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
            protein 5, isoforma protein.
          Length = 1544

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 212  Y*GNFRAAHQYQHYQVAKRLYPVTTSHLSNHFHSQIHPS 96
            Y G+F           + RL P+T SHL+N+  +++H S
Sbjct: 1401 YEGDFSIEESMYAINPSGRLDPITNSHLNNNSTNRLHSS 1439


>U39849-2|AAN63462.2|  370|Caenorhabditis elegans Hypothetical
           protein C06A8.8a protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 500 QDGLLMLVMPLLGEIKETDLNLKEKPKLATLIVKFATDILLLPYRALPNQGETE 661
           Q  +L +++   GEI   D +LK++PK   +        +LLP ++ P   ET+
Sbjct: 144 QVSILSVIISGAGEILPFDSHLKDEPKQTEMSYIELDKGILLPLKSKPKMRETK 197


>Z82059-9|CAB04875.1|  292|Caenorhabditis elegans Hypothetical
           protein T27E9.3 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -2

Query: 587 WPALASLSNLDPFP*FHPT----EALPTLEGR 504
           WP++  L +  P+P +HPT    + +P L  R
Sbjct: 227 WPSITQLPDYKPYPIYHPTLTWSQIVPNLNSR 258


>AF129111-1|AAD37121.1|  292|Caenorhabditis elegans cell division
           protein kinase 5 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -2

Query: 587 WPALASLSNLDPFP*FHPT----EALPTLEGR 504
           WP++  L +  P+P +HPT    + +P L  R
Sbjct: 227 WPSITQLPDYKPYPIYHPTLTWSQIVPNLNSR 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,507
Number of Sequences: 27780
Number of extensions: 324621
Number of successful extensions: 793
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)