Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4k15
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 84 2e-18
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 84 2e-18
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 2.4
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 23 7.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 7.5
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 23 7.5
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 23 7.5
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 23 7.5
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 23 7.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 23 7.5
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual 22 9.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 22 9.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 84.2 bits (199), Expect = 2e-18
Identities = 35/42 (83%), Positives = 36/42 (85%)
Frame = +3
Query: 6 LRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 131
L+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 82 LKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 84.2 bits (199), Expect = 2e-18
Identities = 35/42 (83%), Positives = 36/42 (85%)
Frame = +3
Query: 6 LRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNLRP 131
L+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 82 LKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 3 FLRILAMKYNCEKMICRKCYARLHPR--ATNCRKTK 104
F+R + + K+ICR C + H T C++TK
Sbjct: 65 FVRGRTVSVSDPKVICRTCQPKQHDSIWCTACQQTK 100
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 22.6 bits (46), Expect = 7.5
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -3
Query: 206 FACYENSIVTINFPFGYYLILDLLFGSQIVSVSALCLATVGSTRMKTGI 60
F C + + T+NFP ++ F S + SV + R K G+
Sbjct: 275 FLCLASPLFTMNFPMAIFM---YWFPSNVFSVFQGAFLRSSTIRHKLGL 320
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 22.6 bits (46), Expect = 7.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = -2
Query: 186 YCYNKFPIWLLFNP*SSFW 130
YC + IW P + FW
Sbjct: 574 YCVSSSSIWNFIKPYTEFW 592
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 22.6 bits (46), Expect = 7.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 224 LLF*VSFACYENSIVTINFPFGYYLILDLLFGSQIVSVSALCLATVGSTR 75
LL+ V Y + I F YY I+ L+G+ S L L T+ R
Sbjct: 1124 LLWIVFMPIYAVAAPAIGFSKEYYGIIPHLYGNLKFWASLLVLPTIALMR 1173
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 22.6 bits (46), Expect = 7.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 63 HSIYGKSFSHSYTSWRECEGR 1
HS+ FS YTS+ + EG+
Sbjct: 203 HSLLAVFFSSKYTSYAQKEGQ 223
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 22.6 bits (46), Expect = 7.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 143 DLLFGSQIVSVSALCLATVGSTRMKTGIAFTANHFLTV 30
DLL SQI+ + CL T+ + +FL V
Sbjct: 1648 DLLSYSQILWTAIACLTTIHEDEFIESVKIAYAYFLRV 1685
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 22.6 bits (46), Expect = 7.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 155 YLILDLLFGSQIVSVSALCLATVGS 81
YL++ + +GS IVSV C++ + S
Sbjct: 357 YLLMGIQYGSSIVSVQ-WCISLLSS 380
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 22.6 bits (46), Expect = 7.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 21 MKYNCEKMICRKCYAR 68
+ +N K +C KCY R
Sbjct: 342 LSFNSLKSLCSKCYLR 357
>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 257
Score = 22.2 bits (45), Expect = 9.9
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2
Query: 63 HSIYGKSFS 37
HSIYGK+FS
Sbjct: 114 HSIYGKAFS 122
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 22.2 bits (45), Expect = 9.9
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 21 MKYNCEKMICRKCYA 65
++ NCE C+KC++
Sbjct: 1060 IRLNCEVSNCKKCFS 1074
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,483
Number of Sequences: 5004
Number of extensions: 13812
Number of successful extensions: 27
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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